Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq611 95.1 2e-14
seq616 89.7 9e-13
>seq611
Length=17302
Score = 95.1 bits (104), Expect = 2e-14
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238
|| || |||||||| || || | ||| || | ||||||||||| || || | | |
Sbjct 5150 ATGTTGTAGTCGGACAAAGTGCGGCCATCTTCCAGCTGTTTTCCGGCGAAGATGAGGCGC 5209
Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298
|| || || || || |||||||| || || || ||||||| || | || ||| |||
Sbjct 5210 TGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATTTTGGCCTTCACGTTCTCAATGGTA 5269
Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358
|||||| ||||| || || || || ||||| ||||| ||||| || || || || |||
Sbjct 5270 TCGGAACCTTCAACCTCAAGGGTGATGGTTTTTCCTGTGAGCGTCTTCACGAAGATCTGC 5329
Query 193359 AT 193360
||
Sbjct 5330 AT 5331
>seq616
Length=1528
Score = 89.7 bits (98), Expect = 9e-13
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238
||||| |||||||| | || | | ||| || | || |||||||| || || |||| |
Sbjct 918 ATATTGTAGTCGGAGAGGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATCAATCGC 977
Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298
|| || || || || |||||||||||||| || || |||| || | || ||| ||
Sbjct 978 TGCTGGTCTGGGGGAATTCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCAATCGTG 1037
Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358
||||| || ||||| ||||| || || || || || | || || ||||| || |||
Sbjct 1038 TCGGAGCCTTCCACTTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGC 1097
Query 193359 AT 193360
||
Sbjct 1098 AT 1099
Score = 86.0 bits (94), Expect = 1e-11
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
||||| || ||||| | || | || || || || |||||||| || || | | |
Sbjct 151 CGAAGGACGAGATGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGACCA 210
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | || |||||||| ||||| | | ||| || || || || |||||||||||
Sbjct 211 TCCTCGAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCTGGGGGAATTCCTTCTTTG 270
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
|| || || |||| ||| | |||| || ||||| || ||| || || || || ||
Sbjct 271 TCCTGGATCTTGGCTTTGACATTTTCGATGGTATCAGAGCCCTCGACCTCCAGGGTAATC 330
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || || || || || || || |||||
Sbjct 331 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 365
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899588792702880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |