Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq4364 93.3 6e-14
seq616 93.3 6e-14
seq311 87.8 3e-12
seq611 86.0 9e-12
>seq4364
Length=177085
Score = 93.3 bits (102), Expect = 6e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || || | || || | ||||| || || || || | |||||||| | |||
Sbjct 157147 AATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACGATCACCCTGGAAGTCGAGGGTTC 157088
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|| | ||| |||||||| || || ||||| ||||||||||| |||||||| ||
Sbjct 157087 GGACACCATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCAGATCA 157028
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977
|| | ||||| | ||||| ||||||||||||||
Sbjct 157027 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAAGA 156992
>seq616
Length=1528
Score = 93.3 bits (102), Expect = 6e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || |||||||| || || || || | ||||| |||| ||
Sbjct 1099 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAAGTGGAAGGCTCC 1040
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| |||||||| || || || ||||||||||| || || ||||| ||
Sbjct 1039 GACACGATTGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGAATTCCCCCAGACCAG 980
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978
|| ||||||| | ||||| |||||||| ||||||
Sbjct 979 CAGCGATTGATCTTCGCCGGAAAGCAGCTGGAAGAT 944
Score = 86.0 bits (94), Expect = 9e-12
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || || | || || | || ||||| || ||||| | ||||| |||| |||
Sbjct 1327 ATGCAGATCTTCGTCAAGACGCTCACCGGAAAGACGATTACTCTTGAAGTTGAAGGCTCT 1268
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || || || ||| || || ||||| || ||||| || |||||||| ||
Sbjct 1267 GACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCTCCAGACCAG 1208
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| ||||||| | ||||| ||||||||||| ||| | | ||||| || || || ||
Sbjct 1207 CAGCGATTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACTTTGTCCGACTACAAC 1148
Query 156003 AT 156004
||
Sbjct 1147 AT 1146
>seq311
Length=48857
Score = 87.8 bits (96), Expect = 3e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || || | || || | || || || || ||||| | |||||||||| |||
Sbjct 16605 AATGCAGATCTTCGTGAAGACCCTCACCGGGAAGACCATTACCCTCGAAGTCGAAGCTTC 16664
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||| | || |||||||| || || || ||||| || ||||| |||||||| ||
Sbjct 16665 TGACAGCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATTCCTCCAGATCA 16724
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977
|| | ||||| | ||||| ||||||||||||||
Sbjct 16725 GCAGCGCTTGATCTTCGCCGGAAAGCAGCTCGAAGA 16760
>seq611
Length=17302
Score = 86.0 bits (94), Expect = 9e-12
Identities = 119/167 (71%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 155838 AAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAAC 155897
||||| | || ||||| || || || | || ||||||| ||||| | ||| |||
Sbjct 6165 AAAACGCTCACCGGAAAGACGATCACTCTTGAGGTCGAAGGCTCTGACACGATTGAGAAC 6106
Query 155898 GTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTAT 155957
||||| ||||| |||||||| ||||| || || ||||| || || | ||||||
Sbjct 6105 GTGAAGGCCAAAATCCAAGATAAGGAAGGAATTCCCCCAGACCAGCAGCGCCTGATTTTC 6046
Query 155958 GCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATAT 156004
||||| ||||||||||| ||| | ||||| || || || || ||
Sbjct 6045 GCCGGCAAGCAGCTCGAGGATGGTCGCACTTTGTCCGACTACAACAT 5999
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731818628234400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |