Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq4364 93.3 6e-14 seq616 93.3 6e-14 seq311 87.8 3e-12 seq611 86.0 9e-12 >seq4364 Length=177085 Score = 93.3 bits (102), Expect = 6e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | || || | ||||| || || || || | |||||||| | ||| Sbjct 157147 AATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACGATCACCCTGGAAGTCGAGGGTTC 157088 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| |||||||| || || ||||| ||||||||||| |||||||| || Sbjct 157087 GGACACCATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCAGATCA 157028 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || | ||||| | ||||| |||||||||||||| Sbjct 157027 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAAGA 156992 >seq616 Length=1528 Score = 93.3 bits (102), Expect = 6e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || |||||||| || || || || | ||||| |||| || Sbjct 1099 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAAGTGGAAGGCTCC 1040 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| || || || ||||||||||| || || ||||| || Sbjct 1039 GACACGATTGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGAATTCCCCCAGACCAG 980 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || ||||||| | ||||| |||||||| |||||| Sbjct 979 CAGCGATTGATCTTCGCCGGAAAGCAGCTGGAAGAT 944 Score = 86.0 bits (94), Expect = 9e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || | || ||||| || ||||| | ||||| |||| ||| Sbjct 1327 ATGCAGATCTTCGTCAAGACGCTCACCGGAAAGACGATTACTCTTGAAGTTGAAGGCTCT 1268 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || ||| || || ||||| || ||||| || |||||||| || Sbjct 1267 GACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCTCCAGACCAG 1208 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||||| | ||||| ||||||||||| ||| | | ||||| || || || || Sbjct 1207 CAGCGATTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACTTTGTCCGACTACAAC 1148 Query 156003 AT 156004 || Sbjct 1147 AT 1146 >seq311 Length=48857 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | || || | || || || || ||||| | |||||||||| ||| Sbjct 16605 AATGCAGATCTTCGTGAAGACCCTCACCGGGAAGACCATTACCCTCGAAGTCGAAGCTTC 16664 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | || |||||||| || || || ||||| || ||||| |||||||| || Sbjct 16665 TGACAGCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATTCCTCCAGATCA 16724 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || | ||||| | ||||| |||||||||||||| Sbjct 16725 GCAGCGCTTGATCTTCGCCGGAAAGCAGCTCGAAGA 16760 >seq611 Length=17302 Score = 86.0 bits (94), Expect = 9e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 155838 AAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAAC 155897 ||||| | || ||||| || || || | || ||||||| ||||| | ||| ||| Sbjct 6165 AAAACGCTCACCGGAAAGACGATCACTCTTGAGGTCGAAGGCTCTGACACGATTGAGAAC 6106 Query 155898 GTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTAT 155957 ||||| ||||| |||||||| ||||| || || ||||| || || | |||||| Sbjct 6105 GTGAAGGCCAAAATCCAAGATAAGGAAGGAATTCCCCCAGACCAGCAGCGCCTGATTTTC 6046 Query 155958 GCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATAT 156004 ||||| ||||||||||| ||| | ||||| || || || || || Sbjct 6045 GCCGGCAAGCAGCTCGAGGATGGTCGCACTTTGTCCGACTACAACAT 5999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731818628234400