Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3631 104 7e-17 seq5071 96.9 1e-14 seq4804 86.0 2e-11 seq5716 84.2 6e-11 >seq3631 Length=33887 Score = 104 bits (114), Expect = 7e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 ||||| || ||||||||||||||||||| | ||| || ||||| | ||| ||| | ||| Sbjct 17278 CCAACGGCGTCAATTTCGTCAATGAAAAGAATACAAGGCGAATTCTTTCTGGCAGTGGCA 17219 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | || | ||||| | || || | ||| || ||||||| | || |||||| || Sbjct 17218 AACATATCGCGAACACGCGCTGGACCGACACCGACGAACATTTCCAAGAACTCAGAACCG 17159 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 || ||| || | ||||| ||||| |||||| ||| | |||| ||| || ||| Sbjct 17158 CTGACGGTAATAAAAGGCACATTGGCTTCACCTGCTGTGGCCTTGGCCAAAAGAGTTTTA 17099 Query 289210 CCTGTTCCAGGTGGTCC 289226 || ||||| || || || Sbjct 17098 CCCGTTCCTGGAGGGCC 17082 >seq5071 Length=368534 Score = 96.9 bits (106), Expect = 1e-14 Identities = 143/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133404 AGAAGCACAAACTATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACT 133463 ||||| |||| || ||||||||||| ||||| || || || ||||||||| |||||| Sbjct 135356 AGAAGAACAAGCTCTTCAACGCCATCCAAGAATTCCCATGCATCAAAAAGAAAGCTGACT 135297 Query 133464 GGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTG 133523 |||| || |||||| |||||| ||| || | || ||| | | || || | Sbjct 135296 GGGCGCTTCGTTGGATCGGTGACAAGAACGCGTCGTTCGGAACACGTGTGATCGCCTTCG 135237 Query 133524 CTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCT-CTATTTTTTGGCTTAAAAAG 133582 ||| || ||||||||||| ||| || ||||| ||| | || || ||| | |||||| Sbjct 135236 CTGCTGTGGAGGGCATTTTCTTCTCAGGATCGTTC-GCTGCCATATTCTGGTTGAAAAAG 135178 Query 133583 CGTGGTATTCTACCTGGACT 133602 |||||| | | ||||| || Sbjct 135177 CGTGGTCTCATGCCTGGCCT 135158 >seq4804 Length=43020 Score = 86.0 bits (94), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643 ||||| | |||||||||||| || |||||| | |||||| || || ||||| || ||| Sbjct 2991 TTGATGAGACGACGCTGAATGTACCCAGTTTCGGCTGTTTTGACCGCGGTATCGATGAGA 2932 Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAG 302703 || ||||||| |||||||| ||||| || | ||| ||| ||| || | | || Sbjct 2931 CCTTCACGACCGCCCATAGCGTGGAAAAAGAACTCGGACGGGGTTAGACCAGCGAGGTAG 2872 Query 302704 GAGCTCTCAACGAAACCACG 302723 ||| |||| || || ||||| Sbjct 2871 GAGTTCTCGACAAAGCCACG 2852 >seq5716 Length=132174 Score = 84.2 bits (92), Expect = 6e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 155648 GCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGC 155707 |||||| || || | |||||| || || ||||||||||||||||| || | || || || Sbjct 122048 GCACAGATTTGAGCACTTGATCGTTCCCAAATTCTTCTGGTTAGACTTTCGATTGCATGC 121989 Query 155708 ATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTG 155746 ||| ||||| || ||||| || ||||| || || ||||| Sbjct 121988 ATCTTTGTAAAGCATGTAAGGAGTTCCGGTTTCGATCTG 121950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471707584394058