Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq3631 104 7e-17
seq5071 96.9 1e-14
seq4804 86.0 2e-11
seq5716 84.2 6e-11
>seq3631
Length=33887
Score = 104 bits (114), Expect = 7e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089
||||| || ||||||||||||||||||| | ||| || ||||| | ||| ||| | |||
Sbjct 17278 CCAACGGCGTCAATTTCGTCAATGAAAAGAATACAAGGCGAATTCTTTCTGGCAGTGGCA 17219
Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149
|| | || | ||||| | || || | ||| || ||||||| | || |||||| ||
Sbjct 17218 AACATATCGCGAACACGCGCTGGACCGACACCGACGAACATTTCCAAGAACTCAGAACCG 17159
Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209
|| ||| || | ||||| ||||| |||||| ||| | |||| ||| || |||
Sbjct 17158 CTGACGGTAATAAAAGGCACATTGGCTTCACCTGCTGTGGCCTTGGCCAAAAGAGTTTTA 17099
Query 289210 CCTGTTCCAGGTGGTCC 289226
|| ||||| || || ||
Sbjct 17098 CCCGTTCCTGGAGGGCC 17082
>seq5071
Length=368534
Score = 96.9 bits (106), Expect = 1e-14
Identities = 143/200 (72%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 133404 AGAAGCACAAACTATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACT 133463
||||| |||| || ||||||||||| ||||| || || || ||||||||| ||||||
Sbjct 135356 AGAAGAACAAGCTCTTCAACGCCATCCAAGAATTCCCATGCATCAAAAAGAAAGCTGACT 135297
Query 133464 GGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTG 133523
|||| || |||||| |||||| ||| || | || ||| | | || || |
Sbjct 135296 GGGCGCTTCGTTGGATCGGTGACAAGAACGCGTCGTTCGGAACACGTGTGATCGCCTTCG 135237
Query 133524 CTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCT-CTATTTTTTGGCTTAAAAAG 133582
||| || ||||||||||| ||| || ||||| ||| | || || ||| | ||||||
Sbjct 135236 CTGCTGTGGAGGGCATTTTCTTCTCAGGATCGTTC-GCTGCCATATTCTGGTTGAAAAAG 135178
Query 133583 CGTGGTATTCTACCTGGACT 133602
|||||| | | ||||| ||
Sbjct 135177 CGTGGTCTCATGCCTGGCCT 135158
>seq4804
Length=43020
Score = 86.0 bits (94), Expect = 2e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643
||||| | |||||||||||| || |||||| | |||||| || || ||||| || |||
Sbjct 2991 TTGATGAGACGACGCTGAATGTACCCAGTTTCGGCTGTTTTGACCGCGGTATCGATGAGA 2932
Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAG 302703
|| ||||||| |||||||| ||||| || | ||| ||| ||| || | | ||
Sbjct 2931 CCTTCACGACCGCCCATAGCGTGGAAAAAGAACTCGGACGGGGTTAGACCAGCGAGGTAG 2872
Query 302704 GAGCTCTCAACGAAACCACG 302723
||| |||| || || |||||
Sbjct 2871 GAGTTCTCGACAAAGCCACG 2852
>seq5716
Length=132174
Score = 84.2 bits (92), Expect = 6e-11
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 155648 GCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGC 155707
|||||| || || | |||||| || || ||||||||||||||||| || | || || ||
Sbjct 122048 GCACAGATTTGAGCACTTGATCGTTCCCAAATTCTTCTGGTTAGACTTTCGATTGCATGC 121989
Query 155708 ATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTG 155746
||| ||||| || ||||| || ||||| || || |||||
Sbjct 121988 ATCTTTGTAAAGCATGTAAGGAGTTCCGGTTTCGATCTG 121950
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471707584394058
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |