Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq1811 178 3e-40 >seq1811 Length=36858 Score = 178 bits (196), Expect = 3e-40 Identities = 549/835 (66%), Gaps = 22/835 (3%) Strand=Plus/Plus Query 8438 GGCGCTCCGGTTCTCACCGGCGCGGTGGCTGCAATGGCGGATGAGCCGTTTGATTATATC 8497 ||||| |||| | ||| |||| |||| || ||| ||||| |||||||| | ||| Sbjct 22765 GGCGCCCCGGACATGGCCGCCGCGCTGGCGGCGTTGGGTGATGAACCGTTTGAATTCATC 22824 Query 8498 GGTCTGCCGTTCAACGACACGGCCTCCGTTAACACGCTGGTGACCGA-GATGAACGATAC 8556 ||| ||| | | ||| |||||| | | || | |||| | ||| |||| ||||||| Sbjct 22825 TGTCAGCCCTGGAGCGATACGGCCACGCTCGACGC-CTGGAAAGCGACGATGGACGATAC 22883 Query 8557 CAGCGGTCGCTGGAGCTATGCGCGTCAGCTGTATGGTCATGTGTATACGGCAAAGACCGG 8616 ||| |||||| || || ||||| ||||| ||||| || | || ||| ||| Sbjct 22884 GGCCGGGCGCTGGTCCTGGGCCAAGCAGCTCTATGGCCATGTTTACAGCGCCAAGCGCGG 22943 Query 8617 CACACTGTCAGAACTGGTGAACGCAGGT--GACCAGTTTAACCAGCAGCACATCACCCTG 8674 | | || |||||| ||| || | || | ||| | |||||||| || || Sbjct 22944 TAGCGTCGGCGAGCTGGTGGCCGCCGGCCGGGCCCGC--AACGACCAGCACATGACTTTG 23001 Query 8675 GCGGGGTACGAAAAAGAGA---CCCAGACGCCTGCCGACGAGCTGGCGGCAAGCCGTACC 8731 || | |||| | | ||||| || || | || |||| || || |||| Sbjct 23002 CACGGCTTCGAACGCGGGTTGCCCCAGCCGG-TGTGG--GAAGTGGCCGC--GCAGTACG 23056 Query 8732 GCCCGCGCA--GCGGTGTTTATCCGCAACGATCCGGCACGTCCCACGCAGACCGGTGAGC 8789 |||| | |||||||| ||| | ||| || | || || ||||||||||| | Sbjct 23057 CGGCGCGAACGGCGGTGTTCATCAGTGCCGACCCCGGCCGGCCAACGCAGACCGGCACCC 23116 Query 8790 TGGTGGGTATGCTGCCTGCGCCGAAGGGGAAACGGTTCACGATGACCGAGCAGCAGACCC 8849 || ||| || || || ||| | | || || || ||||||||| || | | Sbjct 23117 TGTCGGGCATTGATCCGGCCCCGGCCAGCGACCGCTTTACACTGACCGAGCGTCAATCGC 23176 Query 8850 TGCTGTCTCATGGCGTGGCAACGGCGTATGTCGAAAGCGGGGTGCTGCGCATTCAGCGTG 8909 ||||| | ||| | || || ||||| ||| |||| | ||||||||||| | Sbjct 23177 TGCTGAGCTACGGCATTGCTACCGCGTACTACGAGGGCGGTTCGTACCGCATTCAGCGCG 23236 Query 8910 ATGTCACCACGTACAGGAAAAATTCTTACGGGGTTGCGGATAACAGCTACCTCGACAGCG 8969 || || |||||| | || | ||||| || |||| ||| || ||||||| Sbjct 23237 CCGTGACGACGTACCAGCGCAACGCATACGGCCAGGCCGATACGTCCTATCTGGACAGCG 23296 Query 8970 AGACGCTGCATACCAGT--GCGTATGTACTGCGCAAACTG-AAATCCGTCATTACCAGTA 9026 || |||||| |||||| ||| | || | ||||| ||| || |||| |||||||| | Sbjct 23297 AGCCGCTGC--ACCAGTCGGCGCACGTGATTCGCAACCTGCAAGGCCGT-ATTACCAGCA 23353 Query 9027 AGTACGGGCGTCACAAGCTTGCCAGCGACGGTACCCGCTTTGGTCCCGGTCAGGCGATTG 9086 | ||||| ||||||||||| |||| ||| || ||| ||| || |||||||| || | Sbjct 23354 AATACGGCCGTCACAAGCTGGCCAACGATGGCACCGCCTTCGGCGATGGTCAGGCCATCG 23413 Query 9087 TCACCCCGGCGGTAATCAAAGGGGAACTGCTGGCAACCTACCGTCAGCTTGAGCGTGCGG 9146 | || ||| ||| ||| || || ||| |||| ||||| | |||| ||||| || | Sbjct 23414 TGACGCCGTTGGTGATCCGTGGCGAGCTGGTGGCGGCCTACGGCGAGCTGGAGCGCGCCG 23473 Query 9147 GGATCGTGGAAAACTACGAACTGTTTAAGCAGTACCTGGTTGTGGAGCGTGATGCCAGCG 9206 | | || || ||| || ||||| ||||| ||||| | || ||||| || || | | Sbjct 23474 GCCTGGTCGAGAACATGGAGCTGTTCAAGCAACACCTGATCGTTGAGCGCGACGCGAAAG 23533 Query 9207 ATCCGAACCGCCTGAACACGCTGTTCCCGCCTGACTATGTTAACCAGTTGCGTGT 9261 | |||||||| | |||||||||||| || || |||||| |||| || Sbjct 23534 ACCCGAACCGAATCGCGGTGCTGTTCCCGCCGGATCTGGTCAACCAGCTGCGCGT 23588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132589213748596