Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq328 181 1e-39 seq4415 156 5e-32 seq3537 141 1e-27 seq2312 140 4e-27 seq3781 129 7e-24 seq3346 129 7e-24 seq3808 127 2e-23 seq4725 87.8 2e-11 >seq328 Length=891 Score = 181 bits (200), Expect = 1e-39 Identities = 172/220 (78%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||||||||| ||| ||| || || |||| ||||||||| ||||| | | || Sbjct 50 GCTTGGCCAGTTCGCCAGGCAGGATGAGTCGGACGGAGGTCTGGATTTCGCGAGAGGAGA 109 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| ||||||| ||||||| ||||||| || ||||||| |||| | Sbjct 110 TGGTCGAGCGCTTGTTGTAGTGCGCGAGACGGCTGGCCTCGTTGGCGATGCGCTCGAAGA 169 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| ||||||||||||| |||||| | ||| ||||| || |||||||| Sbjct 170 CGTCGTTGACGAACGAGTTCATGATCGACATGGCCTTCGACGAGATTCCAGTGTCGGGGT 229 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 |||||||||||||||| ||||| | | |||||| || Sbjct 230 GCACCTGCTTGAGCACGCGGTAGACGTAGACCGAGTAGGA 269 >seq4415 Length=18448 Score = 156 bits (172), Expect = 5e-32 Identities = 152/196 (78%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | ||| |||||||||| ||||||||| ||||| | || Sbjct 6467 GCTTGGCGAGCTCTCCGGGGAGGATGAGGCGCACGGAGGTCTGGATTTCGCGGGACGAGA 6526 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||||| ||||||||| |||| || || || ||| ||| | ||||||| |||| | Sbjct 6527 TCGTGGAGCGCTTGTTGTAGTGGGCGAGGCGCGAGGCTTCGCCGGCGATGCGCTCGAAGA 6586 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || ||||||||||||| ||||||| |||| |||||| || |||||||| Sbjct 6587 CGTCGTTCACGAACGAGTTCATGATGGACATCGCCTTGGAGGAGATTCCGGTGTCGGGGT 6646 Query 1254523 GCACCTGCTTGAGCAC 1254538 |||||||||||||||| Sbjct 6647 GCACCTGCTTGAGCAC 6662 >seq3537 Length=139359 Score = 141 bits (156), Expect = 1e-27 Identities = 164/219 (75%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 92603 GGCGATCTGGCGCGTGAGGGCCTCCTGCACCTGGAAGCG--GTCGGAAAACATGTCGACG 92660 |||||| || |||||| |||||||||||||| || ||| ||| ||| |||||| Sbjct 73945 GGCGATTTGCTTGGTGAGGCGCTCCTGCACCTGGAGCCGACGTCCGAA--CATCTCGACG 74002 Query 92661 ATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGTGGGCAGGTAGCCCACGTGGGCC 92720 ||||||| || ||||| ||||||| |||| | ||||||||||||| | ||| | Sbjct 74003 ATGCGCGCGAGTTTGCTGAGGCCGAGGATCTTCTTGTTGGGCAGGTAGCCGATGTGCACT 74062 Query 92721 TTGCCCATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACGTCGCGCACG 92780 ||||| || ||||| | || ||||||||||| | ||||| || |||| ||||||||| Sbjct 74063 TTGCCGATGAAGGGGACAAGGTGGTGCTCGCAGAGAGAGAAGAACTCGATGTCGCGCACC 74122 Query 92781 ATCACCATCTCGCCCGAGGCCTCGGCAAAGAGCGCGTCG 92819 | |||||||||| | | ||||| | || | ||| ||| Sbjct 74123 AGCACCATCTCGTCGTGGTCCTCGTCGAACACCGCTTCG 74161 >seq2312 Length=17903 Score = 140 bits (154), Expect = 4e-27 Identities = 161/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||||| |||||| ||| || |||||||| ||||| ||||||||||| | | ||||| Sbjct 2471 TGGCCAACTCGCCGGGCAGAATGAGGCGCACCGCGGTTTGGATCTCGCGGGAGGAGATCG 2530 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| | |||| || || || ||| || ||||||| |||| | || Sbjct 2531 TGGAGCGCTTGTTATACTGCGTGAGGCGCGACGCTTCGCTGGCGATGCGCTCGAAGACGT 2590 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 || ||| ||||||||||||| ||||| | ||| |||||||| ||| ||||||| Sbjct 2591 CGCCGACGAACGAGTTCATGATGGACATTGCCTTCGACGAGATGCCGGTGTCCGGGTGCA 2650 Query 1254526 CCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 ||||||| | ||| ||||||| | |||||| || Sbjct 2651 CCTGCTTCATCACGCGGTAGATGTAGACCGAGTAGGA 2687 Score = 86.0 bits (94), Expect = 8e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||||| |||||| ||| || |||||||||||||| ||||||||||| | | ||||| Sbjct 4880 TGGCCAACTCGCCGGGCAGAATGAGGCGCACGGCGGTTTGGATCTCGCGGGAGGAGATCG 4821 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| | |||| || || || ||| || ||||||| |||| | || Sbjct 4820 TGGAGCGCTTGTTGTACTGCGTGAGGCGCGACGCTTCGCTGGCGATGCGCTCGAAGACGT 4761 Query 1254466 CG 1254467 || Sbjct 4760 CG 4759 >seq3781 Length=46925 Score = 129 bits (142), Expect = 7e-24 Identities = 146/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||||||| ||| | | ||| || || ||||||||||| || ||||| | || Sbjct 45300 GCTTGGCCAGTTCACCGGGGAGGATGAGACGGACGGCGGTCTGAATTTCGCGGGATGAGA 45241 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| || || || ||| || | | ||||| |||| | Sbjct 45240 TGGTGGAGCGCTTGTTGTAGTGGGCGAGGCGCGAGGCTTCCTGGGCAATGCGTTCGAAGA 45181 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||| ||||| ||||||||||||| ||||| | ||| |||||| || |||||||| Sbjct 45180 CGTCATTGACGAACGAGTTCATGATGGACATGGCCTTCGAGGAGATTCCAGTGTCGGGGT 45121 Query 1254523 GCACCTGCTTGAGCAC 1254538 ||||||||||||| || Sbjct 45120 GCACCTGCTTGAGAAC 45105 >seq3346 Length=85265 Score = 129 bits (142), Expect = 7e-24 Identities = 150/198 (76%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 ||||||| || |||||||| | ||||||||| || | | | || || ||| | Sbjct 67832 AGAAGCGAACTGACGACATTCCCGAGTGGGACAAATCCTTCTTCAAGGTTGACCAGGGAA 67773 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAA--GCCTCTGCTCGATCT 1592223 | || || ||| ||||| | ||||||||||||||||| ||| ||||| || || || Sbjct 67772 CGCTGTTCGAGCTGATCTTGGCCGCCAACTACCTCGAGATCCGCGGCCTC--CTGGA-CT 67716 Query 1592224 TGGG-TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGA 1592282 |||| |||||| |||||||||||||||||||||| ||| ||||| || |||||| || Sbjct 67715 TGGGATGCAAGACTGTGGCCAACATGATCAAGGGAAAGAGCCCCGAAGATATCCGCCGGA 67656 Query 1592283 CCTTTAACATCAAGTACG 1592300 | || ||||||||| ||| Sbjct 67655 CGTTCAACATCAAGAACG 67638 >seq3808 Length=33171 Score = 127 bits (140), Expect = 2e-23 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||| || ||||| | | ||| ||||| |||| ||||||||| ||||| | || | Sbjct 18856 TGGCGAGCTCGCCAGGGAGGATGAGGCGGACGGAGGTCTGGATTTCGCGGGAAGAAATGG 18797 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | |||||||| |||| || ||||| ||| ||| | ||||||| || | | || Sbjct 18796 TCGATCGCTTGTTGTAGTGAGCGAGACGCGAGGCTTCGCCGGCGATGCGCTCAAAGACGT 18737 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| ||||||||||||| ||||| | ||| |||||||| ||||||||||| Sbjct 18736 CGTTGACGAACGAGTTCATGATGGACATTGCCTTCGACGAGATGCCGGTGTCGGGGTGCA 18677 Query 1254526 CCTGCTTGAGCAC 1254538 ||||||||||||| Sbjct 18676 CCTGCTTGAGCAC 18664 >seq4725 Length=10679 Score = 87.8 bits (96), Expect = 2e-11 Identities = 164/236 (69%), Gaps = 5/236 (2%) Strand=Plus/Plus Query 733031 CAACGGCGACGGCGCCAACGCCGTCAAGATC-GTGACGCGCGCCATGCGCCAGCCCGAGT 733089 |||| |||||||| ||| |||||| ||| | | | ||| | ||||| || | Sbjct 558 CAACTGCGACGGCAACAAATTCGTCAAAATCCGCGTC-CGCTCAGTGCGCTTCCCTCAAA 616 Query 733090 TGGGCGACAAACTGTCGTCGCGCCACGGCCAAAAGGGCACCGTGGGCAGCGTGCGCTCCA 733149 | ||||||||| | | || || ||||| || ||||| || |||| | | || | | Sbjct 617 TCGGCGACAAATTCGCTTCCCGGCACGGTCAGAAGGGAACGATGGGAATCATGTACCGCC 676 Query 733150 CCGAGGACATGCCCTGGTCGCCGCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGC 733209 ||||||||||| | || | | ||| || ||||||||||| | |||||||| | Sbjct 677 AGGAGGACATGCCGT--TCAC-GTGCGAGGGAATTTCGCCCGACATCATCATCAACCCCC 733 Query 733210 ACGCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGAGGCCCTCCTGGGCAAG 733265 ||||| |||| || || |||||||| ||| | || ||||| ||||| ||| ||| Sbjct 734 ACGCCGTCCCCTCTCGTATGACCATTGGCCATTTGATCGAGTGCCTCCAGGGGAAG 789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106660434639378