Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq1811 179 9e-41 >seq1811 Length=36858 Score = 179 bits (198), Expect = 9e-41 Identities = 564/855 (66%), Gaps = 28/855 (3%) Strand=Plus/Plus Query 8410 CCGGCGCGGTGGCTGCAATGGCGGATGAGCCGTTTGATTATATCGGCCTGCCGTTCAACG 8469 ||| |||| |||| || ||| ||||| |||||||| | ||| | | ||| | | || Sbjct 22781 CCGCCGCGCTGGCGGCGTTGGGTGATGAACCGTTTGAATTCATCTGTCAGCCCTGGAGCG 22840 Query 8470 ACACGGCCTCCGTTAACACGCTGGTGACCGA-GATGAACGATACCAGCGGTCGCTGGAGC 8528 | |||||| | | || | |||| | ||| |||| ||||||| ||| |||||| | Sbjct 22841 ATACGGCCACGCTCGACGC-CTGGAAAGCGACGATGGACGATACGGCCGGGCGCTGGTCC 22899 Query 8529 TATGCGCGTCAGCTGTATGGTCATGTGTATACGGCAAAGATCGGCA-CGCTGTCAGAACT 8587 | || ||||| ||||| ||||| || | || ||| ||| | || | | || || Sbjct 22900 TGGGCCAAGCAGCTCTATGGCCATGTTTACAGCGCCAAGCGCGGTAGCGTCGGC-GAGCT 22958 Query 8588 GGTGACCGCAGGT--GACCAGTTTAACCAGCAGCACATTACCCTGGCGGGGTACGAAAAA 8645 |||| |||| || | || | ||| | |||||||| || || || | |||| Sbjct 22959 GGTGGCCGCCGGCCGGGCCCGC--AACGACCAGCACATGACTTTGCACGGCTTCGAACGC 23016 Query 8646 GACA---CCCAGACGCCTGCCGATGAGCTGGCGGCAAGCCGTACCGCCCGCGCA--GCGG 8700 | ||||| || || | || |||| || || |||| |||| | |||| Sbjct 23017 GGGTTGCCCCAGCCGG-TGTGG--GAAGTGGCCGC--GCAGTACGCGGCGCGAACGGCGG 23071 Query 8701 TGTTTATTCGCAACGATCCGGCACGTCCCACGCAGACCGGTGAGCTGGTGGGTATGCTGC 8760 |||| || | ||| || | || || ||||||||||| ||| ||| || | Sbjct 23072 TGTTCATCAGTGCCGACCCCGGCCGGCCAACGCAGACCGGCACCCTGTCGGGCATTGATC 23131 Query 8761 CTGCGCCGAAGGGGAAACGGTTCACGATGACCGAACAACAGACCCTGCTGTCTCATGGCG 8820 | || ||| | | || || || ||||||| | || | |||||| | ||| Sbjct 23132 CGGCCCCGGCCAGCGACCGCTTTACACTGACCGAGCGTCAATCGCTGCTGAGCTACGGCA 23191 Query 8821 TGGCAACGGCGTATGTCGAAAGCGGG--GTACTGCGCATTCAGCGTGATGTCACCACGTA 8878 | || || ||||| ||| |||| |||| ||||||||||| | || || ||||| Sbjct 23192 TTGCTACCGCGTACTACGAGGGCGGTTCGTAC--CGCATTCAGCGCGCCGTGACGACGTA 23249 Query 8879 CAGGAAAAACGCTTACGGGGTTGCGGATAACAGCTACCTCGACAGCGAGACGCTGCATAC 8938 | | ||||| ||||| || |||| ||| || ||||||||| |||||| || Sbjct 23250 CCAGCGCAACGCATACGGCCAGGCCGATACGTCCTATCTGGACAGCGAGCCGCTGC--AC 23307 Query 8939 CAG--CGCGTATGTACTGCGCAAACTG-AAATCCGTCATTACCAGTAAGTACGGGCGTCA 8995 ||| ||| | || | ||||| ||| || |||| |||||||| || ||||| ||||| Sbjct 23308 CAGTCGGCGCACGTGATTCGCAACCTGCAAGGCCGT-ATTACCAGCAAATACGGCCGTCA 23366 Query 8996 CAAGCTTGCCAGTGACGGTACCCGCTTTGGTCCCGGTCAGGCGATTGTCACCCCGGCGGT 9055 |||||| |||| || || ||| ||| || |||||||| || || || ||| ||| Sbjct 23367 CAAGCTGGCCAACGATGGCACCGCCTTCGGCGATGGTCAGGCCATCGTGACGCCGTTGGT 23426 Query 9056 GATCAAAGGGGAACTGCTGGCAACCTACCGTCAGCTTGAGCGAGCGGGGATCGTGGAAAA 9115 |||| || || ||| |||| ||||| | |||| ||||| || || | || || || Sbjct 23427 GATCCGTGGCGAGCTGGTGGCGGCCTACGGCGAGCTGGAGCGCGCCGGCCTGGTCGAGAA 23486 Query 9116 CTACGAACTGTTTAAGCAGTACCTGGTTTTGGAGCGTGATGCCAGCGATCCGAACCGCCT 9175 | || ||||| ||||| ||||| | | ||||| || || | || |||||||| | Sbjct 23487 CATGGAGCTGTTCAAGCAACACCTGATCGTTGAGCGCGACGCGAAAGACCCGAACCGAAT 23546 Query 9176 GAACACGCTGTTCCCGCCTGACTATGTTAACCAGTTGCGTGTCTTTGCCGTGGTTAACCA 9235 |||||||||||| || || |||||| |||| ||| | ||| || | || Sbjct 23547 CGCGGTGCTGTTCCCGCCGGATCTGGTCAACCAGCTGCGCGTCCTGGCCCTGTCGTATCA 23606 Query 9236 GCTCCGTCTTCAGTA 9250 | |||| || ||||| Sbjct 23607 GTTCCGGCTGCAGTA 23621 Score = 140 bits (154), Expect = 8e-29 Identities = 306/459 (67%), Gaps = 17/459 (4%) Strand=Plus/Plus Query 10318 CTTCCCATGTCTGCAGACGGGATCGCGGAAATTGTGGCGGCTGGCGGTCAGGCCGGGATT 10377 || || ||| | || ||||||||||| |||| || ||||||||||||||| | || ||| Sbjct 24778 CTGCCGATGGCGGCGGACGGGATCGCTAAAATCGTTGCGGCTGGCGGTCAGTCGGGCATT 24837 Query 10378 GC---------------ACGTGATGAACTGATGCAGTTTGCCACTGATGCGGTGAAGATG 10422 || ||| || || || | ||||| ||| || ||||| || ||| Sbjct 24838 GCCCGGAAAGGTTTCGAACGGGAAGACCTCAACCAGTTCGCCGAGGACGCGGTAAAAATG 24897 Query 10423 GGCGTGGCCTTTGATACCACGGCTGAAGAGTCCGGGCAGATGATGGCCCAGTGGCGTACT 10482 |||||||| || || ||||| ||| |||||||| | |||||||| ||||||| || Sbjct 24898 GGCGTGGCTTTCGACCAGACGGCCGAACAGTCCGGGGAAATGATGGCGAAGTGGCGCACC 24957 Query 10483 GCGTTTAATATGACGCAGGATGAAGTGGCCGGGCTGGCTGACAAAATCAACTACCTTGGT 10542 |||||| | |||| || ||||||| ||||| ||||| |||||||| || | Sbjct 24958 GCGTTTCACATGAGCCAAACCGAAGTGGTGACCCTGGCCGACAAGATCAACTATCTAGCG 25017 Query 10543 AATACCGGCCCAGCGAACGCGAAGAAAATCTCCGATATTGTTACGCGTATTGGTCCTTTA 10602 || | |||| | || | | | ||||||| | || || || || || || || Sbjct 25018 AACAACGGCGCGGCCAGTACCGCGCAAATCTCGGCCATCGTGACAGCCATCGGCCCGTTG 25077 Query 10603 GGTGGTGTTGCAGGTGTGGCTTCCGGCGAAATCGCGGCAATGGGGGCAACCATTGCCGGG 10662 || | || || || || | || | ||||||| |||||| | | | |||||| Sbjct 25078 GGCGAGGTGGCCGGGGTCAACGCTGGGCAGCTCGCGGCGATGGGGTCGGCTCTGGCCGGG 25137 Query 10663 ATGGGCGTGGAGTCA-GAAATTGCCGCCACAGGGGTCAAGAACTTCATGCTTTCCCTGAC 10721 |||| | | | || || | || ||||| || |||| ||||| ||||| | |||| Sbjct 25138 GTGGGAATCG-GCCAGGAGGTGGCAGCCACCGGCATCAAAAACTTTATGCTGACGCTGAG 25196 Query 10722 CGCGGGAAATTCTGCGACAAAATCGCAGAAACAGGCATT 10760 ||| || | | || || || ||||||||| | || || Sbjct 25197 CGCCGGCACGGCGGCTACTAAGTCGCAGAAAGAAGCGTT 25235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127095194393760