Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq616 104 2e-17 seq4364 102 6e-17 seq611 95.1 9e-15 >seq616 Length=1528 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || | ||| || || || || || |||||||| || || | | ||||| | Sbjct 1113 CGAAGGACGAGATGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGGCCA 1172 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || || || || | ||||||| ||||| || || ||||| || || ||| Sbjct 1173 TCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGAGGAATTCCTTCCTTG 1232 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || ||||||| | || | |||||||| ||| ||||||||||| || Sbjct 1233 TCTTGGATCTTGGCTTTGACATTCTCGATGGTGTCAGAGCCTTCAACTTCAAGAGTAATC 1292 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | || || || || |||||||| Sbjct 1293 GTCTTTCCGGTGAGCGTCTTGACGAAGATCTGCAT 1327 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || | ||| || ||||||||||| || ||||| || |||| || |||||| | Sbjct 379 CGGAGGACGAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCA 438 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || || || | || | | ||||| || || || || || || ||| Sbjct 439 TCCTCAAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCTGGGGGGATTCCTTCCTTG 498 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || || || | || | ||||| || ||| ||||| | || || Sbjct 499 TCTTGGATCTTGGCCTTCACGTTCTCGATGGTGTCCGAGCCTTCCACTTCCAAGGTGATC 558 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || ||||| || | ||||| || || ||||||||| Sbjct 559 GTCTTGCCGGTGAGCGTTTTGACGAAGATCTGCATT 594 >seq4364 Length=177085 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || | ||| || || ||||| || || ||||| ||||| | | |||||| Sbjct 156932 CGGAGTACGAGATGGAGGGTCGATTCCTTCTGGATGTTGTAATCGGAGAGAGTGCGACCG 156991 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || || || || | ||||| | |||||||| || ||||| || |||||| Sbjct 156992 TCTTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCTTCTTTG 157051 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || || || | || | ||||| ||| || ||||| || || || Sbjct 157052 TCTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCCGAACCCTCGACTTCCAGGGTGATC 157111 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || |||||||| | ||| || || || ||||||||| Sbjct 157112 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATT 157147 >seq611 Length=17302 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| || || ||||||||||| || ||||| || || | | |||||| | Sbjct 5966 CGAAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAAAGTGCGACCA 6025 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || ||||| || | |||| | ||||| || || ||||| || || || Sbjct 6026 TCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCTGGGGGAATTCCTTCCTTA 6085 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | ||| || || | || | |||||||| ||| || |||||||| || Sbjct 6086 TCTTGGATTTTGGCCTTCACGTTCTCAATCGTGTCAGAGCCTTCGACCTCAAGAGTGATC 6145 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 || || || || | ||||| || || ||||| Sbjct 6146 GTCTTTCCGGTGAGCGTTTTGACGAAGATCTG 6177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385191810192594