Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq4388 141 7e-28 seq5658 107 1e-17 seq4443 107 1e-17 seq4386 87.8 1e-11 >seq4388 Length=30719 Score = 141 bits (156), Expect = 7e-28 Identities = 252/365 (69%), Gaps = 2/365 (1%) Strand=Plus/Minus Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 || |||||||||||||| || || | | ||||| || | |||| | | |||| ||| Sbjct 6654 CGGTTATCAAAATCTTCTCCGCCGAGATGAGTATCGCCGGCGGTAGATTTGACTTCAAAA 6595 Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 | ||| ||||||| || | | || |||||| ||||||||| || | ||| |||||| Sbjct 6594 ATTCCTTCTTCAATAGTTAGGATAGAGACATCAAAGGTTCCACCGCCGAGATCGAAAATA 6535 Query 282308 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367 || ||||| |||| || ||||| || | ||||| || | |||||||||||| Sbjct 6534 AGGACATTGCGTTCTCCGTGACCTTTTTTGTCCAAGCCATAGGCGATAGCAGCAGCAGTC 6475 Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 ||||| || ||||| | | ||| || | || | || || |||||||| || || Sbjct 6474 GGTTCGTTGATAATGCGGAGAACGTTTAATCCGGAGATGGCACCGGCATCTTTGGTTGCC 6415 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGT-TACTTCTTT 282486 || | ||| ||||| ||||| || || || |||| ||| || ||| | || || || Sbjct 6414 TGACGTTGACTGTCGTTGAAATAGGCGGGTACGGTAACAACAGCGTCTTTGCACGTCGTT 6355 Query 282487 TCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTC 282546 ||| | |||| || || | |||||| || ||| | ||| |||||||| | ||| Sbjct 6354 CCCAGGA-AAGCCTCAGCGGTCTCTTTCATCTTGATTAGCACCATCGATGAAATCTCTTC 6296 Query 282547 TGGAG 282551 |||| Sbjct 6295 GGGAG 6291 >seq5658 Length=101664 Score = 107 bits (118), Expect = 1e-17 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || || | |||||| |||| || |||||||| || || || |||| | | ||||||| Sbjct 71510 TTGTCCAAACCATAGGCAAGGGCGGCAGCAGTAGGCTCGTTGATAACACGGAGAACATTA 71451 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 ||||||| |||| ||| |||||||| ||||| || | || || ||||| ||||| || Sbjct 71450 AGACCAGAAATTTGTCCGGCATCTTTGGTGGCCTGGCGCTGAGAGTCGTTGAAATAAGCG 71391 Query 282455 GGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGC 282498 || ||||||||||| || | || ||| | |||| | ||||| Sbjct 71390 GGCACAGTAATAACCGCGTTGGTCACTGTTGTTCCCAAGTAAGC 71347 >seq4443 Length=182794 Score = 107 bits (118), Expect = 1e-17 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 637099 CCAAATACTATTACAAAGAAAATTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAA 637158 ||||| | | | | ||||||| || || || | ||| || ||||| ||||| || | Sbjct 142550 CCAAAGATTCTCAAAAAGAAAGCGATCGTTGACTTTTCGTCGCCAAACATTGCAAAGCAG 142609 Query 637159 ATGCATATTGGACATTTAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAA 637218 |||||| |||| || |||||| ||||||||||||| || ||| | | | | | || Sbjct 142610 ATGCATGTTGGTCACTTAAGAACAACTATTATTGGAGATGTTATCTCTCGCCTTATGGAG 142669 Query 637219 ATGTGTGGACACGATGTTTATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGT 637278 | |||| |||||| |||| | |||||| |||||||||||||||| || || || Sbjct 142670 TTTGTTGGATTTGATGTTCTTCGTCTCAATCATTTGGGTGATTGGGGAACCCAGTTTGGA 142729 Query 637279 ATGTTAATTGCT 637290 ||| |||||||| Sbjct 142730 ATGCTAATTGCT 142741 >seq4386 Length=106676 Score = 87.8 bits (96), Expect = 1e-11 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || |||||||| || || |||| ||| || ||||| ||||| || || || | | ||| Sbjct 93968 TTCTTATCAAGTCCGTAGGCAATAGCGGCGGCAGTAGGTTCGTTGATGATACGGACAACG 94027 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || | |||||| ||| || ||||| || || || || | || | |||||| || || Sbjct 94028 TTCAAACCAGCGATTACGCCGGCATCCTTGGTCGCCTGACGCTGGGCATCGTTGAAGTAA 94087 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCC 282489 ||||| ||||| | ||||| | | ||||||||||| Sbjct 94088 GCAGGGACAGTGACGACGGCGTGCTTAACTTCTTTTCC 94125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740343975254484