Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq4388 141 7e-28
seq5658 107 1e-17
seq4443 107 1e-17
seq4386 87.8 1e-11
>seq4388
Length=30719
Score = 141 bits (156), Expect = 7e-28
Identities = 252/365 (69%), Gaps = 2/365 (1%)
Strand=Plus/Minus
Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247
|| |||||||||||||| || || | | ||||| || | |||| | | |||| |||
Sbjct 6654 CGGTTATCAAAATCTTCTCCGCCGAGATGAGTATCGCCGGCGGTAGATTTGACTTCAAAA 6595
Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307
| ||| ||||||| || | | || |||||| ||||||||| || | ||| ||||||
Sbjct 6594 ATTCCTTCTTCAATAGTTAGGATAGAGACATCAAAGGTTCCACCGCCGAGATCGAAAATA 6535
Query 282308 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367
|| ||||| |||| || ||||| || | ||||| || | ||||||||||||
Sbjct 6534 AGGACATTGCGTTCTCCGTGACCTTTTTTGTCCAAGCCATAGGCGATAGCAGCAGCAGTC 6475
Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427
||||| || ||||| | | ||| || | || | || || |||||||| || ||
Sbjct 6474 GGTTCGTTGATAATGCGGAGAACGTTTAATCCGGAGATGGCACCGGCATCTTTGGTTGCC 6415
Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGT-TACTTCTTT 282486
|| | ||| ||||| ||||| || || || |||| ||| || ||| | || || ||
Sbjct 6414 TGACGTTGACTGTCGTTGAAATAGGCGGGTACGGTAACAACAGCGTCTTTGCACGTCGTT 6355
Query 282487 TCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTC 282546
||| | |||| || || | |||||| || ||| | ||| |||||||| | |||
Sbjct 6354 CCCAGGA-AAGCCTCAGCGGTCTCTTTCATCTTGATTAGCACCATCGATGAAATCTCTTC 6296
Query 282547 TGGAG 282551
||||
Sbjct 6295 GGGAG 6291
>seq5658
Length=101664
Score = 107 bits (118), Expect = 1e-17
Identities = 122/164 (74%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394
|| || | |||||| |||| || |||||||| || || || |||| | | |||||||
Sbjct 71510 TTGTCCAAACCATAGGCAAGGGCGGCAGCAGTAGGCTCGTTGATAACACGGAGAACATTA 71451
Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454
||||||| |||| ||| |||||||| ||||| || | || || ||||| ||||| ||
Sbjct 71450 AGACCAGAAATTTGTCCGGCATCTTTGGTGGCCTGGCGCTGAGAGTCGTTGAAATAAGCG 71391
Query 282455 GGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGC 282498
|| ||||||||||| || | || ||| | |||| | |||||
Sbjct 71390 GGCACAGTAATAACCGCGTTGGTCACTGTTGTTCCCAAGTAAGC 71347
>seq4443
Length=182794
Score = 107 bits (118), Expect = 1e-17
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 637099 CCAAATACTATTACAAAGAAAATTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAA 637158
||||| | | | | ||||||| || || || | ||| || ||||| ||||| || |
Sbjct 142550 CCAAAGATTCTCAAAAAGAAAGCGATCGTTGACTTTTCGTCGCCAAACATTGCAAAGCAG 142609
Query 637159 ATGCATATTGGACATTTAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAA 637218
|||||| |||| || |||||| ||||||||||||| || ||| | | | | | ||
Sbjct 142610 ATGCATGTTGGTCACTTAAGAACAACTATTATTGGAGATGTTATCTCTCGCCTTATGGAG 142669
Query 637219 ATGTGTGGACACGATGTTTATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGT 637278
| |||| |||||| |||| | |||||| |||||||||||||||| || || ||
Sbjct 142670 TTTGTTGGATTTGATGTTCTTCGTCTCAATCATTTGGGTGATTGGGGAACCCAGTTTGGA 142729
Query 637279 ATGTTAATTGCT 637290
||| ||||||||
Sbjct 142730 ATGCTAATTGCT 142741
>seq4386
Length=106676
Score = 87.8 bits (96), Expect = 1e-11
Identities = 114/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
|| |||||||| || || |||| ||| || ||||| ||||| || || || | | |||
Sbjct 93968 TTCTTATCAAGTCCGTAGGCAATAGCGGCGGCAGTAGGTTCGTTGATGATACGGACAACG 94027
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| | |||||| ||| || ||||| || || || || | || | |||||| || ||
Sbjct 94028 TTCAAACCAGCGATTACGCCGGCATCCTTGGTCGCCTGACGCTGGGCATCGTTGAAGTAA 94087
Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCC 282489
||||| ||||| | ||||| | | |||||||||||
Sbjct 94088 GCAGGGACAGTGACGACGGCGTGCTTAACTTCTTTTCC 94125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740343975254484
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |