Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_024365.1
Length=51090
Score E
Sequences producing significant alignments: (Bits) Value
seq1811 170 6e-38
>seq1811
Length=36858
Score = 170 bits (188), Expect = 6e-38
Identities = 359/526 (68%), Gaps = 32/526 (6%)
Strand=Plus/Plus
Query 12960 ATCACCGCGCAGCAACTACTGCAGATCCTCCCGAACGCCGGCCAGAGAGCCGGCGTTTTT 13019
||||| | |||||| | |||||||||||||| |||||| ||| ||| |||||||||
Sbjct 34129 ATCACAGAGCAGCAGTTGCTGCAGATCCTCCCCAACGCCCGCCGCCAAGCGGGCGTTTTT 34188
Query 13020 GCACCCGTTCTCAATACGGCGATGAGCAAGTACCAGATCGTGACACCGCTGCGCATCGCG 13079
| || | || || || | |||||||| ||| |||| | || | |||| || |||
Sbjct 34189 GTTCCTGCCCTAAACGCGACCATGAGCAAATACGCGATCATCACTCGCTTGCGGATTGCG 34248
Query 13080 GCATTCATTGCCCAGGTCGGTCATGAATCCGGCCAACTGCGCTACGTGCGTGAGATATGG 13139
|| ||||| || ||| |||| || || || ||||| |||| |||||||| ||| | |||
Sbjct 34249 GCGTTCATCGCGCAGATCGGCCACGAGTCTGGCCAGCTGCAGTACGTGCGCGAGCT-TGG 34307
Query 13140 GGGCCGACCCCGCAGCAGTTGGG---GTACG--AGGGGC------GCAAAG-ACCTGGGC 13187
| |||| ||| | || | ||||| | ||| || ||| |||||||
Sbjct 34308 TAG-CGAC----CAGTACCTGAGCAAGTACGACACCGGCACCCTGGCCAAGCGCCTGGGC 34362
Query 13188 AATACC------GTGCCGGGCGATGGCTCCAAATACCGTGGGCGCGGCCTGATCCAGATC 13241
|||||| | | ||||| || || ||||| || | || ||||| ||| ||
Sbjct 34363 AATACCCCCGAAGCGGATGGCGACGGTCAGAAGTACCGGGGCAGGGGGCTGATTCAGGTC 34422
Query 13242 ACCGGACGGGCAAACTATGCTGAGTGCGGCGAAGCGCTG----GGCCTG--GGCCTGATC 13295
|| || ||||| ||||||| | || ||||||||||| | || | ||| ||
Sbjct 34423 ACGGGCCGGGCGAACTATGAAGCCTGTAGCGAAGCGCTGTTCAGCGATGCTCGACTGCTC 34482
Query 13296 GACCACCCCGAATTGCTCGAGCTACCGCAGCACGCCGCGATGTCGGCAGCGTGGTTCTGG 13355
|| ||| || |||| || ||| | |||||| ||||||| | |||||||||
Sbjct 34483 AACACCCCGGAGCTGCTGGAAAACCCGGTCTATGCCGCGTTGTCGGCGGGTTGGTTCTGG 34542
Query 13356 -GGCAAGAGTGGGCTCAATACGCTGGCAGACAAAAGCGAGTTCGTGACCATCACCCGGCG 13414
|| | | || || || || ||||| ||||| |||| ||| | || |||||| |||
Sbjct 34543 CAGCGTGCG-GGCCTGAACACCCTGGCCGACAAGGGCGACTTCCTCACGATCACCAAGCG 34601
Query 13415 CATCAACGGCGGCACGAATGGCTTGGCTGATCGGCAGGCGCTTTAT 13460
|||||||||||| | || ||| |||| || || ||||||| |||
Sbjct 34602 CATCAACGGCGGAATCAACGGCCTGGCGGACCGTGAGGCGCTGTAT 34647
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 163355082180016
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |