Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq5007 109 4e-19
seq611 102 5e-17
seq4364 96.9 2e-15
seq4382 89.7 3e-13
seq871 89.7 3e-13
seq616 87.8 1e-12
>seq5007
Length=89527
Score = 109 bits (120), Expect = 4e-19
Identities = 152/209 (73%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617
|||||| || |||||||| |||||||| |||||| |||| || | ||| |||||||| ||
Sbjct 22295 CTCTTTCTGGATGTTGTAGTCGGAGAGCGTGCGTCCGTCCTCGAGTTGCTTTCCGGCGAA 22354
Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677
|| | |||||||| ||| | || | ||||| ||||| || || |||| | |
Sbjct 22355 GATGAGGCGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCA-CGT 22413
Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736
|| | ||| ||| ||| || || | ||||||||| || ||||| | ||||| |
Sbjct 22414 TCTCGATGGTATCGGAGCCTTCGACCTCGAGCGTGATCGTCTTCCCTGTGAGGGTTTTCA 22473
Query 33737 CAAAGATCTGCATAGTTGGTGTGTTTATC 33765
||||||||||||| | || | |||| |||
Sbjct 22474 CAAAGATCTGCATGGCTGAT-TGTTGATC 22501
>seq611
Length=17302
Score = 102 bits (112), Expect = 5e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| |||| | ||| | || | ||| |||||| || || || ||||||||||| |||
Sbjct 5333 CCTCCTCGGAGACGAAGGACGAGATGGAGAGTGGATTCCTTCTGAATGTTGTAATCCGAG 5392
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| | || ||||| || |||||||| || ||||| |||||||||||| | ||
Sbjct 5393 AGGGTGCGGCCATCTTCCAACTGCTTTCCGGCGAAGATCAATCGCTGCTGATCTGGGGGA 5452
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||| || || || || ||| || | || | ||| || ||| ||
Sbjct 5453 ATTCCTTCCTTATCTTGGATCTTGGCCTTC-ACGTTCTCGATGGTATCCGAACCTTCAAC 5511
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| ||||| ||||| || || | |||||| || |||||||||||
Sbjct 5512 CTCAAGGGTGATGGTTTTTCCGGTGAGCGTTTTGACGAAGATCTGCAT 5559
Score = 96.9 bits (106), Expect = 2e-15
Identities = 146/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605
||| ||||| ||| || || |||||||| |||||||| ||||| | || |||| ||
Sbjct 4643 ATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCCAGCTG 4702
Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665
||||| || |||||||| |||||||| ||| | || | ||||| ||||| || ||
Sbjct 4703 CTTTCCAGCGAAAATCAATCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTT 4762
Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724
|||| | | || | |||||| | ||| || || | |||||||| || || |
Sbjct 4763 GGCCTTCA-CGTTCTCGATGGTGTCCGATCCTTCGACCTCGAGTGTGATCGTCTTGCCAG 4821
Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749
| || || || || |||||||||||
Sbjct 4822 TCAAGGTCTTCACGAAGATCTGCAT 4846
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606
|| ||||| ||| || || |||||||| ||||| | ||||| | || |||| |||
Sbjct 5129 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCTTCCAGCTGT 5188
Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666
|||||||| || || | |||||||| ||| | || | ||||| ||||| |||||
Sbjct 5189 TTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATTTTG 5248
Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725
||| || | || | ||| ||| ||| || |||| ||||| ||||| |||||
Sbjct 5249 GCCTTC-ACGTTCTCAATGGTATCGGAACCTTCAACCTCAAGGGTGATGGTTTTTCCTGT 5307
Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749
| ||| || || |||||||||||
Sbjct 5308 GAGCGTCTTCACGAAGATCTGCAT 5331
>seq4364
Length=177085
Score = 96.9 bits (106), Expect = 2e-15
Identities = 80/98 (82%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618
|| || || ||||||||||||||||| ||||| |||| || | || |||||||| ||
Sbjct 156956 TCCTTCTGGATGTTGTAATCGGAGAGAGTGCGACCGTCTTCGAGCTGCTTTCCGGCGAAG 157015
Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656
|||||||||||||||||| | || | |||||||||||
Sbjct 157016 ATCAAACGCTGCTGATCTGGAGGAATGCCTTCTTTGTC 157053
>seq4382
Length=33595
Score = 89.7 bits (98), Expect = 3e-13
Identities = 131/183 (72%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 33573 GTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTG 33632
|||||||| | | |||| | || |||| |||| ||| | | || | ||||||
Sbjct 11821 GTAATCGGCAACCGGGCGTCCCTCTTCCAGGAGTTTGCCGCCGTAGATGAGTCGCTGCA- 11763
Query 33633 ATCTTGC-GGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGC 33691
|| |||| || || || || ||||| || || |||||||||| || ||| | |||||
Sbjct 11762 ATTTTGCCGGAACTCCATCCTTGTCCGCGATCTTCTGTTTCACGATTTCCACCGCGTCGC 11703
Query 33692 TTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAG 33751
| |||||||| | ||||||||||| || || |||||| || ||||||||||| |
Sbjct 11702 TGCTCTCCACGTCCAGAGTGATCGTTTTGCCGGTGAACGTTCGCACGAAGATCTGCATGG 11643
Query 33752 TTG 33754
|||
Sbjct 11642 TTG 11640
>seq871
Length=2590
Score = 89.7 bits (98), Expect = 3e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | | ||| | ||| | ||| | ||| || ||||| |||||||| ||| |
Sbjct 725 CCACCACGGAGACGGAGCACGAGATGCAAAGTCGATTCCTTTTGGATGTTGTAGTCGTTG 666
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| || || |||| || | || |||||||| || ||||||||||||||||| | ||
Sbjct 665 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGGGGA 606
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| |||||||||||| || ||| | | || | || | | |||| ||||||
Sbjct 605 ATACCTTCTTTGTCCTGGATCTTC-GCCTTTACGTTCTCGATGCTGTCAGAACCTTCCAC 547
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | |||||||| || || || | || || || |||||||||||
Sbjct 546 TTCCAGGGTGATCGTCTTCCCGGTGAGGGTCTTCACGAAGATCTGCAT 499
>seq616
Length=1528
Score = 87.8 bits (96), Expect = 1e-12
Identities = 136/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618
|| || || || ||||| |||||||| ||||| | || |||| || |||||||| ||
Sbjct 909 TCCTTCTGGATATTGTAGTCGGAGAGGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAG 968
Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678
||||| |||||||| ||| | || | |||||||| || || || |||| | |
Sbjct 969 ATCAATCGCTGCTGGTCTGGGGGAATTCCTTCTTTATCCTGGATCTTGGCCTTCA-CGTT 1027
Query 33679 GTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737
||| |||||| |||||| || | ||||| || || || || || || || ||
Sbjct 1028 CTCAATCGTGTCGGAGCCTTCCACTTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCAC 1087
Query 33738 AAAGATCTGCAT 33749
||||||||||||
Sbjct 1088 AAAGATCTGCAT 1099
Score = 84.2 bits (92), Expect = 1e-11
Identities = 143/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605
||| || ||| ||||| || |||||||| || || || ||||| | || || | ||
Sbjct 390 ATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCAAGCTG 449
Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665
|||||||| ||||| | |||||||| ||| | || | ||||| ||||| || ||
Sbjct 450 CTTTCCGGCGAAAATGAGGCGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCTTGGATCTT 509
Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724
|||| | | || | |||||| |||||| || | |||||||| || || |
Sbjct 510 GGCCTTCA-CGTTCTCGATGGTGTCCGAGCCTTCCACTTCCAAGGTGATCGTCTTGCCGG 568
Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749
| | |||||| || |||||||||||
Sbjct 569 TGAGCGTTTTGACGAAGATCTGCAT 593
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328680628529280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |