Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq5007 109 4e-19 seq611 102 5e-17 seq4364 96.9 2e-15 seq4382 89.7 3e-13 seq871 89.7 3e-13 seq616 87.8 1e-12 >seq5007 Length=89527 Score = 109 bits (120), Expect = 4e-19 Identities = 152/209 (73%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 |||||| || |||||||| |||||||| |||||| |||| || | ||| |||||||| || Sbjct 22295 CTCTTTCTGGATGTTGTAGTCGGAGAGCGTGCGTCCGTCCTCGAGTTGCTTTCCGGCGAA 22354 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | |||||||| ||| | || | ||||| ||||| || || |||| | | Sbjct 22355 GATGAGGCGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCA-CGT 22413 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | ||| ||| ||| || || | ||||||||| || ||||| | ||||| | Sbjct 22414 TCTCGATGGTATCGGAGCCTTCGACCTCGAGCGTGATCGTCTTCCCTGTGAGGGTTTTCA 22473 Query 33737 CAAAGATCTGCATAGTTGGTGTGTTTATC 33765 ||||||||||||| | || | |||| ||| Sbjct 22474 CAAAGATCTGCATGGCTGAT-TGTTGATC 22501 >seq611 Length=17302 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| | ||| | || | ||| |||||| || || || ||||||||||| ||| Sbjct 5333 CCTCCTCGGAGACGAAGGACGAGATGGAGAGTGGATTCCTTCTGAATGTTGTAATCCGAG 5392 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || ||||| || |||||||| || ||||| |||||||||||| | || Sbjct 5393 AGGGTGCGGCCATCTTCCAACTGCTTTCCGGCGAAGATCAATCGCTGCTGATCTGGGGGA 5452 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || || || ||| || | || | ||| || ||| || Sbjct 5453 ATTCCTTCCTTATCTTGGATCTTGGCCTTC-ACGTTCTCGATGGTATCCGAACCTTCAAC 5511 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| ||||| || || | |||||| || ||||||||||| Sbjct 5512 CTCAAGGGTGATGGTTTTTCCGGTGAGCGTTTTGACGAAGATCTGCAT 5559 Score = 96.9 bits (106), Expect = 2e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| ||||| ||| || || |||||||| |||||||| ||||| | || |||| || Sbjct 4643 ATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCCAGCTG 4702 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 ||||| || |||||||| |||||||| ||| | || | ||||| ||||| || || Sbjct 4703 CTTTCCAGCGAAAATCAATCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTT 4762 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 |||| | | || | |||||| | ||| || || | |||||||| || || | Sbjct 4763 GGCCTTCA-CGTTCTCGATGGTGTCCGATCCTTCGACCTCGAGTGTGATCGTCTTGCCAG 4821 Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749 | || || || || ||||||||||| Sbjct 4822 TCAAGGTCTTCACGAAGATCTGCAT 4846 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| || || |||||||| ||||| | ||||| | || |||| ||| Sbjct 5129 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCTTCCAGCTGT 5188 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 |||||||| || || | |||||||| ||| | || | ||||| ||||| ||||| Sbjct 5189 TTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATTTTG 5248 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 ||| || | || | ||| ||| ||| || |||| ||||| ||||| ||||| Sbjct 5249 GCCTTC-ACGTTCTCAATGGTATCGGAACCTTCAACCTCAAGGGTGATGGTTTTTCCTGT 5307 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | ||| || || ||||||||||| Sbjct 5308 GAGCGTCTTCACGAAGATCTGCAT 5331 >seq4364 Length=177085 Score = 96.9 bits (106), Expect = 2e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || ||||||||||||||||| ||||| |||| || | || |||||||| || Sbjct 156956 TCCTTCTGGATGTTGTAATCGGAGAGAGTGCGACCGTCTTCGAGCTGCTTTCCGGCGAAG 157015 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 |||||||||||||||||| | || | ||||||||||| Sbjct 157016 ATCAAACGCTGCTGATCTGGAGGAATGCCTTCTTTGTC 157053 >seq4382 Length=33595 Score = 89.7 bits (98), Expect = 3e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 33573 GTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTG 33632 |||||||| | | |||| | || |||| |||| ||| | | || | |||||| Sbjct 11821 GTAATCGGCAACCGGGCGTCCCTCTTCCAGGAGTTTGCCGCCGTAGATGAGTCGCTGCA- 11763 Query 33633 ATCTTGC-GGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGC 33691 || |||| || || || || ||||| || || |||||||||| || ||| | ||||| Sbjct 11762 ATTTTGCCGGAACTCCATCCTTGTCCGCGATCTTCTGTTTCACGATTTCCACCGCGTCGC 11703 Query 33692 TTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAG 33751 | |||||||| | ||||||||||| || || |||||| || ||||||||||| | Sbjct 11702 TGCTCTCCACGTCCAGAGTGATCGTTTTGCCGGTGAACGTTCGCACGAAGATCTGCATGG 11643 Query 33752 TTG 33754 ||| Sbjct 11642 TTG 11640 >seq871 Length=2590 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||| | ||| | ||| || ||||| |||||||| ||| | Sbjct 725 CCACCACGGAGACGGAGCACGAGATGCAAAGTCGATTCCTTTTGGATGTTGTAGTCGTTG 666 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | || |||||||| || ||||||||||||||||| | || Sbjct 665 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGGGGA 606 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| || ||| | | || | || | | |||| |||||| Sbjct 605 ATACCTTCTTTGTCCTGGATCTTC-GCCTTTACGTTCTCGATGCTGTCAGAACCTTCCAC 547 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | |||||||| || || || | || || || ||||||||||| Sbjct 546 TTCCAGGGTGATCGTCTTCCCGGTGAGGGTCTTCACGAAGATCTGCAT 499 >seq616 Length=1528 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || || ||||| |||||||| ||||| | || |||| || |||||||| || Sbjct 909 TCCTTCTGGATATTGTAGTCGGAGAGGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAG 968 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| |||||||| ||| | || | |||||||| || || || |||| | | Sbjct 969 ATCAATCGCTGCTGGTCTGGGGGAATTCCTTCTTTATCCTGGATCTTGGCCTTCA-CGTT 1027 Query 33679 GTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| |||||| |||||| || | ||||| || || || || || || || || Sbjct 1028 CTCAATCGTGTCGGAGCCTTCCACTTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCAC 1087 Query 33738 AAAGATCTGCAT 33749 |||||||||||| Sbjct 1088 AAAGATCTGCAT 1099 Score = 84.2 bits (92), Expect = 1e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| || ||| ||||| || |||||||| || || || ||||| | || || | || Sbjct 390 ATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCAAGCTG 449 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 |||||||| ||||| | |||||||| ||| | || | ||||| ||||| || || Sbjct 450 CTTTCCGGCGAAAATGAGGCGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCTTGGATCTT 509 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 |||| | | || | |||||| |||||| || | |||||||| || || | Sbjct 510 GGCCTTCA-CGTTCTCGATGGTGTCCGAGCCTTCCACTTCCAAGGTGATCGTCTTGCCGG 568 Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749 | | |||||| || ||||||||||| Sbjct 569 TGAGCGTTTTGACGAAGATCTGCAT 593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328680628529280