Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq616 132 1e-25 seq611 129 1e-24 seq4364 105 2e-17 seq5007 102 2e-16 seq871 98.7 2e-15 >seq616 Length=1528 Score = 132 bits (146), Expect = 1e-25 Identities = 155/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| |||||||| ||||| ||||| ||| | ||||| ||| | |||||| Sbjct 1324 CAGATCTTCGTCAAGACGCTCACCGGAAAGACGATTACTCTTGAAGTTGAAGGCTCTGAC 1265 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||||| || ||| ||||| || ||||||||| || ||| || Sbjct 1264 ACCATCGAGAATGTCAAAGCCAA-GATCCAAGACAAGGAAGGAATTCCTCCAGACCAGCA 1206 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || | |||||||||||||||||| | || ||||| | |||||| |||| |||||| | Sbjct 1205 GCGATTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACTTTGTCCGACTACAACAT 1146 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || || || || Sbjct 1145 TCAGAAGGAGTCAACCCTCCATCTCGT 1119 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||||||||| || || |||||||| |||||||||||| | || ||| Sbjct 590 CAGATCTTCGTCAAAACGCTCACCGGCAAGACGATCACCTTGGAAGTGGAAGGCTCGGAC 531 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| || |||||||| || ||| || Sbjct 530 ACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGAATCCCCCCAGACCAGCAG 471 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || ||||||||||||||| | || ||||| | || | | || |||||| || Sbjct 470 CGCCTCATTTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTTTCGGACTACAACATC 411 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||| || || || || || || Sbjct 410 CAGAAAGAATCCACCCTCCATCTCGT 385 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || || || |||||| ||||||||||| | || ||| Sbjct 1096 CAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAAGTGGAAGGCTCCGAC 1037 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || |||||||||||| || ||| || Sbjct 1036 ACGATTGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGAATTCCCCCAGACCAGCAG 977 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | |||||||||||||||||| |||||||||| | || | |||| ||||| || Sbjct 976 CGATTGATCTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACCCTCTCCGACTACAATATC 917 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || || || || ||||| || Sbjct 916 CAGAAGGAATCGACCCTCCACCTCGT 891 Score = 105 bits (116), Expect = 2e-17 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || ||||| || |||| || || | ||||| || ||||| Sbjct 350 AAGACCCTCACTGGCAAGACGATTACCCTGGAGGTCGAGGGCTCTGATACCATCGAAAAT 291 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| || || |||||||||||| || ||| || | || || || Sbjct 290 GTCAAAGCCAA-GATCCAGGACAAAGAAGGAATTCCCCCAGACCAGCAGCGCCTCATTTT 232 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||||||| | || ||||| | |||||| |||| |||||| ||||||| || || Sbjct 231 CGCCGGAAAGCAGCTCGAGGATGGTCGCACTTTGTCCGACTACAACATCCAGAAGGAATC 172 Query 206364 TACTCTTCACCTTGT 206378 || || || || || Sbjct 171 GACCCTCCATCTCGT 157 >seq611 Length=17302 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||||||||| ||||| ||||||||| | || || ||| | |||||| Sbjct 6177 CAGATCTTCGTCAAAACGCTCACCGGAAAGACGATCACTCTTGAGGTCGAAGGCTCTGAC 6118 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || || ||||| || ||||||||| || ||| || Sbjct 6117 ACGATTGAGAACGTGAAGGCCAAAATCCAAGATAAGGAAGGAATTCCCCCAGACCAGCAG 6058 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || |||||||| |||||| | || ||||| | |||||| |||| |||||| || Sbjct 6057 CGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGTCGCACTTTGTCCGACTACAACATC 5998 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||| || || || ||||| || Sbjct 5997 CAGAAAGAATCCACCCTCCACCTGGT 5972 Score = 125 bits (138), Expect = 2e-23 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||||||||||||||| ||||| | || || ||| |||| || || | || Sbjct 5316 AAGACGCTCACAGGAAAAACCATCACCCTTGAGGTTGAAGGTTCCGATACCATTGAGAAC 5257 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || || || || ||||||||| || ||| || | || |||||| Sbjct 5256 GTGAAGGCCAAAATCCAGGACAAGGAAGGAATTCCCCCAGACCAGCAGCGCCTCATCTTC 5197 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||| ||| |||||||||| | |||||| |||| |||||| ||||||| ||||| Sbjct 5196 GCCGGAAAACAGCTGGAAGATGGCCGCACTTTGTCCGACTACAACATCCAGAAGGAGTCG 5137 Query 206365 ACTCTTCAC 206373 ||||| ||| Sbjct 5136 ACTCTCCAC 5128 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||||||||| |||||||| ||||| | || || ||| |||| || Sbjct 5556 CAGATCTTCGTCAAAACGCTCACCGGAAAAACCATCACCCTTGAGGTTGAAGGTTCGGAT 5497 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| || ||||||||| || || || Sbjct 5496 ACCATCGAGAACGTGAAGGCCAAGATCCAAGATAAGGAAGGAATTCCCCCAGATCAGCAG 5437 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||||||||||||||||||||||||||| | || | | ||||||||| | Sbjct 5436 CGATTGATCTTCGCCGGAAAGCAGTTGGAAGATGGCCGCACCCTCTCGGATTACAACATT 5377 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || || ||||| || || || Sbjct 5376 CAGAAGGAATCCACTCTCCATCTCGT 5351 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| ||||| || ||||| | || || ||| |||| ||||| | ||| Sbjct 9443 AAGACCCTCACTGGAAAGACCATCACCCTCGAGGTTGAAGGTTCCGACACTATTGAAAAT 9384 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||||||| || ||| || | || || ||| Sbjct 9383 GTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAGCAGCGCCTCATTTTC 9324 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| |||||||||| | ||| | | || |||||| | ||||| ||||| Sbjct 9323 GCCGGAAAGCAGCTGGAAGATGGCCGCACTCTCTCGGACTACAACATTCAGAAGGAGTCG 9264 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || || ||| | | ||||| Sbjct 9263 ACTCTCCATCTCGTTCTTCGTCTTCG 9238 Score = 107 bits (118), Expect = 5e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || |||||||| || || || || || ||||||| ||| | || ||||| |||| Sbjct 4603 AAGACGCTCACTGGCAAGACCATTACCCTGGAAGTCGAAGGATCGGACACTATCGAGAAC 4544 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || ||||||||| || ||| || | || |||||| Sbjct 4543 GTGAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGACCAACAGCGCCTCATCTTC 4484 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| | || ||||| | || || | || |||||| ||||||| || || Sbjct 4483 GCCGGAAAGCAGCTCGAGGATGGTCGCACCCTGTCGGACTACAACATCCAGAAGGAATCA 4424 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 4423 ACGCTCCACCTCGT 4410 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| | || || || ||| ||||| |||| Sbjct 9848 AAAACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGGCTTCGGACACCATCGAGAAT 9789 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||||||| || || || | || |||||| Sbjct 9788 GTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAGCAGCGCCTCATCTTC 9729 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| | || ||||| | || | | || |||||| ||||||| ||||| Sbjct 9728 GCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCG 9669 Query 206365 ACTCTTCACCTTGT 206378 ||||| || || || Sbjct 9668 ACTCTCCATCTCGT 9655 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 204769 GTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 204828 ||| ||||| ||||| ||||||| || ||||| | |||||| | |||||||||||||| Sbjct 5128 GTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCTTCCAGCTG 5187 Query 204829 CTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||||||||| || || || || Sbjct 5188 TTTTCCGGCGAAGATGAGGCGCTGCTG 5214 >seq4364 Length=177085 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || |||||||| ||||||| || |||| ||||| | || Sbjct 157131 AAGACCCTCACTGGCAAGACGATCACCCTGGAAGTCGAGGGTTCGGACACCATTGAGAAC 157072 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| |||||||| ||| || || || | | |||||| Sbjct 157071 GTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCAGATCAGCAGCGTTTGATCTTC 157012 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| | ||||| || | ||| | ||||||||||| ||||||| || || Sbjct 157011 GCCGGAAAGCAGCTCGAAGACGGTCGCACTCTCTCCGATTACAACATCCAGAAGGAATCG 156952 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || || || | ||||||| Sbjct 156951 ACCCTCCATCTCGTACTCCGACTTCG 156926 >seq5007 Length=89527 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| |||||||| || |||||||| | || || ||| | || || Sbjct 22483 CAGATCTTTGTGAAAACCCTCACAGGGAAGACGATCACGCTCGAGGTCGAAGGCTCCGAT 22424 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| || ||||| || || ||| || Sbjct 22423 ACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCAGACCAGCAG 22364 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||||||||| | || || ||| | || | |||| |||||| || Sbjct 22363 CGCCTCATCTTCGCCGGAAAGCAACTCGAGGACGGACGCACGCTCTCCGACTACAACATC 22304 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| || || || || || Sbjct 22303 CAGAAAGAGTCGACCCTCCATCTCGT 22278 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| |||||||| || |||||||| | || || || | || || Sbjct 22255 CAGATCTTTGTGAAAACCCTCACAGGGAAGACGATCACGCTCGAGGTTGAGGGCTCCGAT 22196 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| || ||||| || || ||| || Sbjct 22195 ACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCAGACCAGCAG 22136 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||||||||| | || || ||| | || | |||| |||||| | Sbjct 22135 CGCCTCATCTTCGCCGGAAAGCAACTCGAGGACGGACGCACGCTCTCCGACTACAACATT 22076 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| || || || || || Sbjct 22075 CAGAAAGAGTCGACCCTCCATCTCGT 22050 >seq871 Length=2590 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || |||||||| ||||||||||| ||||||||| |||| Sbjct 514 AAGACCCTCACCGGGAAGACGATCACCCTGGAAGTGGAAGGTTCTGACAGCATCGAGAAC 573 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || |||||||| ||| || || || | | |||||| Sbjct 574 GTAAAGGCGAAGATCCAGGACAAAGAAGGTATTCCCCCTGATCAGCAGCGTTTGATCTTC 633 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| | ||||| || | || | ||| |||||| |||| || || || Sbjct 634 GCCGGAAAGCAGCTCGAAGACGGCCGAACCCTCAACGACTACAACATCCAAAAGGAATCG 693 Query 206365 ACTCTTCACCTTGT 206378 ||| | || || || Sbjct 694 ACTTTGCATCTCGT 707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181732461111114