Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq5716 95.1 1e-14
seq5007 87.8 2e-12
>seq5716
Length=132174
Score = 95.1 bits (104), Expect = 1e-14
Identities = 248/371 (67%), Gaps = 17/371 (5%)
Strand=Plus/Minus
Query 147259 CGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATG---C 147315
|||| |||| |||||||| ||||||||||| | |||| || || || ||||| |
Sbjct 122308 CGCATTAGCATGAAGGCATCAGCCAAACCCTGAACTCCGATTCCTATTGGGCGATGACGC 122249
Query 147316 TT-TTCGTTGCTGC-GCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGT 147373
|| || | | | | ||||| || ||| ||||||| ||||| ||||| || ||||
Sbjct 122248 TTGTTAGAGGTTTCAGCTTC-----CGGTATAGGATAGTAGTTGCAGTCAATTATTTTGT 122194
Query 147374 TGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGT 147433
| | || || | || || || || | || || || | || | ||| ||
Sbjct 122193 TCAAATTGCGTGTGATGACCTTGGTAATCTCGTGAAGCTTTTCATAGTCGAAGGTCTTGT 122134
Query 147434 CTTCGACACGT-ACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCT 147492
| || | | || || ||||| |||| || ||||||||||| || || ||
Sbjct 122133 CATC----CTTCACAAATCTGTTCAAAGCGACGGAGGCCAGATTGCAAACAGCGACTTCA 122078
Query 147493 TC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAA 147551
|| || | || ||||||||| ||||||| |||||| || ||| || || ||||||
Sbjct 122077 TCTGGGGACG-AGTACTGCACTATTTCGGTGCACAGATTTGAGCACTTGATCGTTCCCAA 122019
Query 147552 ATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGT 147611
||| | ||| || || |||||||| || |||||| | |||||||| || |||||
Sbjct 122018 ATTCTTCTGGTTAGACTTTCGATTGCATGCATCTTTGTAAAGCATGTAAGGAGTTCCGGT 121959
Query 147612 CTCGACTTGCG 147622
|||| ||||
Sbjct 121958 TTCGATCTGCG 121948
>seq5007
Length=89527
Score = 87.8 bits (96), Expect = 2e-12
Identities = 155/226 (69%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||||| || | || | ||| | | | |||||||| ||||||||||||||| | ||
Sbjct 22037 ACGCAGACGAAGGACGAGATGGAGGGTCGACTCTTTCTGAATGTTGTAGTCGGAGAGCGT 22096
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
|| || ||||| || || |||| |||| || ||||| || |||||||| |||||
Sbjct 22097 GCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATGCC 22156
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
||| || || || || |||| | || | ||||||| ||| || ||||
Sbjct 22157 TTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAGCCCTCAACCTCGAG 22216
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127
||| | ||| || || || || ||||| | || ||||||||| ||
Sbjct 22217 CGTGATCGTCTTCCCTGTGAGGGTTTTCACAAAGATCTGCATGCCT 22262
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476576443128240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |