Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq5716 95.1 1e-14 seq5007 87.8 2e-12 >seq5716 Length=132174 Score = 95.1 bits (104), Expect = 1e-14 Identities = 248/371 (67%), Gaps = 17/371 (5%) Strand=Plus/Minus Query 147259 CGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATG---C 147315 |||| |||| |||||||| ||||||||||| | |||| || || || ||||| | Sbjct 122308 CGCATTAGCATGAAGGCATCAGCCAAACCCTGAACTCCGATTCCTATTGGGCGATGACGC 122249 Query 147316 TT-TTCGTTGCTGC-GCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGT 147373 || || | | | | ||||| || ||| ||||||| ||||| ||||| || |||| Sbjct 122248 TTGTTAGAGGTTTCAGCTTC-----CGGTATAGGATAGTAGTTGCAGTCAATTATTTTGT 122194 Query 147374 TGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGT 147433 | | || || | || || || || | || || || | || | ||| || Sbjct 122193 TCAAATTGCGTGTGATGACCTTGGTAATCTCGTGAAGCTTTTCATAGTCGAAGGTCTTGT 122134 Query 147434 CTTCGACACGT-ACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCT 147492 | || | | || || ||||| |||| || ||||||||||| || || || Sbjct 122133 CATC----CTTCACAAATCTGTTCAAAGCGACGGAGGCCAGATTGCAAACAGCGACTTCA 122078 Query 147493 TC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAA 147551 || || | || ||||||||| ||||||| |||||| || ||| || || |||||| Sbjct 122077 TCTGGGGACG-AGTACTGCACTATTTCGGTGCACAGATTTGAGCACTTGATCGTTCCCAA 122019 Query 147552 ATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGT 147611 ||| | ||| || || |||||||| || |||||| | |||||||| || ||||| Sbjct 122018 ATTCTTCTGGTTAGACTTTCGATTGCATGCATCTTTGTAAAGCATGTAAGGAGTTCCGGT 121959 Query 147612 CTCGACTTGCG 147622 |||| |||| Sbjct 121958 TTCGATCTGCG 121948 >seq5007 Length=89527 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | || | ||| | | | |||||||| ||||||||||||||| | || Sbjct 22037 ACGCAGACGAAGGACGAGATGGAGGGTCGACTCTTTCTGAATGTTGTAGTCGGAGAGCGT 22096 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || ||||| || || |||| |||| || ||||| || |||||||| ||||| Sbjct 22097 GCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATGCC 22156 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || || || |||| | || | ||||||| ||| || |||| Sbjct 22157 TTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAGCCCTCAACCTCGAG 22216 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 ||| | ||| || || || || ||||| | || ||||||||| || Sbjct 22217 CGTGATCGTCTTCCCTGTGAGGGTTTTCACAAAGATCTGCATGCCT 22262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476576443128240