Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq328 190 3e-42
seq4415 174 2e-37
seq3781 156 6e-32
seq2312 145 1e-28
seq3808 132 7e-25
seq3537 129 8e-24
>seq328
Length=891
Score = 190 bits (210), Expect = 3e-42
Identities = 191/247 (77%), Gaps = 6/247 (2%)
Strand=Plus/Minus
Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955
|| |||||| || ||||| ||||||||||||||||||||| || |||
Sbjct 269 TCCTACTCGGTCTACGTCTACCGCGTGCTCAAGCAGGTGCACCCCGACAC---TGGAATC 213
Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015
|| || || | |||||||||||||||||||||| ||||||||| | |||| ||||||
Sbjct 212 TCGTCGAA---GGCCATGTCGATCATGAACTCGTTCGTCAACGACGTCTTCGAGCGCATC 156
Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075
| || ||||||| | || || |||| || |||||||||| || ||| | | |||||
Sbjct 155 GCCAACGAGGCCAGCCGTCTCGCGCACTACAACAAGCGCTCGACCATCTCCTCTCGCGAA 96
Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135
||||||||| |||| || || ||| ||| ||||||||||||| ||||||||||||||||
Sbjct 95 ATCCAGACCTCCGTCCGACTCATCCTGCCTGGCGAACTGGCCAAGCACGCCGTCTCCGAG 36
Query 725136 GGCACCA 725142
|| ||||
Sbjct 35 GGAACCA 29
>seq4415
Length=18448
Score = 174 bits (192), Expect = 2e-37
Identities = 173/223 (78%), Gaps = 6/223 (3%)
Strand=Plus/Minus
Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979
||||||||||||||||||||| |||| ||| ||| |||| | ||||| |||
Sbjct 6662 GTGCTCAAGCAGGTGCACCCCGACACCGGA-----ATC-TCCTCCAAGGCGATGTCCATC 6609
Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039
||||||||||| || |||||| | |||| ||||||| | ||| ||| ||||| ||
Sbjct 6608 ATGAACTCGTTCGTGAACGACGTCTTCGAGCGCATCGCCGGCGAAGCCTCGCGCCTCGCC 6549
Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099
| || |||||||||| ||||||| | ||||| ||||||||| |||||||||| |||
Sbjct 6548 CACTACAACAAGCGCTCCACGATCTCGTCCCGCGAAATCCAGACCTCCGTGCGCCTCATC 6489
Query 725100 ATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
| | ||| || || |||| |||||||||||||||||||||||
Sbjct 6488 CTCCCCGGAGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCA 6446
>seq3781
Length=46925
Score = 156 bits (172), Expect = 6e-32
Identities = 169/223 (76%), Gaps = 6/223 (3%)
Strand=Plus/Plus
Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979
|| |||||||||||||||||| || ||| ||||| || | ||||||| |||
Sbjct 45105 GTTCTCAAGCAGGTGCACCCCGACAC---TGGAATCTCCTCGAA---GGCCATGTCCATC 45158
Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039
||||||||||| ||||| ||| | |||| ||||| | | || ||| ||||| ||
Sbjct 45159 ATGAACTCGTTCGTCAATGACGTCTTCGAACGCATTGCCCAGGAAGCCTCGCGCCTCGCC 45218
Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099
| || |||||||||| ||| ||| | ||||| || ||||||||||| || || |||
Sbjct 45219 CACTACAACAAGCGCTCCACCATCTCATCCCGCGAAATTCAGACCGCCGTCCGTCTCATC 45278
Query 725100 ATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
| | ||| |||||||||| |||||||||||||||||||||||
Sbjct 45279 CTCCCCGGTGAACTGGCCAAGCACGCCGTCTCCGAGGGCACCA 45321
>seq2312
Length=17903
Score = 145 bits (160), Expect = 1e-28
Identities = 180/245 (73%), Gaps = 6/245 (2%)
Strand=Plus/Minus
Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955
|| |||||| || |||||| ||| | |||||||||||||| |||| ||
Sbjct 2687 TCCTACTCGGTCTACATCTACCGCGTGATGAAGCAGGTGCACCCGGACACCGG-----CA 2633
Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015
|| || ||| | ||||| |||||||||||||| ||| |||| | |||| ||||||
Sbjct 2632 TC-TCGTCGAAGGCAATGTCCATCATGAACTCGTTCGTCGGCGACGTCTTCGAGCGCATC 2574
Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075
| || ||| || ||||| ||| | ||||||||| ||||||| | | ||||||
Sbjct 2573 GCCAGCGAAGCGTCGCGCCTCACGCAGTATAACAAGCGCTCCACGATCTCCTCCCGCGAG 2514
Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135
||||| ||||| |||||||| || ||| |||||| |||||| ||||| |||||||||
Sbjct 2513 ATCCAAACCGCGGTGCGCCTCATTCTGCCCGGCGAGTTGGCCAAACACGCGGTCTCCGAG 2454
Query 725136 GGCAC 725140
|||||
Sbjct 2453 GGCAC 2449
Score = 120 bits (132), Expect = 4e-21
Identities = 114/146 (78%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 724997 CGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAA 725056
|||| | |||| ||||||| || ||| || ||||| ||| | ||||||||||
Sbjct 4759 CGACGTCTTCGAGCGCATCGCCAGCGAAGCGTCGCGCCTCACGCAGTACAACAAGCGCTC 4818
Query 725057 CACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGC 725116
||||||| | | ||||||||||| |||||||||||||| || ||| |||||| ||||
Sbjct 4819 CACGATCTCCTCCCGCGAGATCCAAACCGCCGTGCGCCTCATTCTGCCCGGCGAGTTGGC 4878
Query 725117 CAGGCACGCCGTCTCCGAGGGCACCA 725142
|| ||||| ||||||||||||||||
Sbjct 4879 CAAACACGCGGTCTCCGAGGGCACCA 4904
>seq3808
Length=33171
Score = 132 bits (146), Expect = 7e-25
Identities = 164/223 (74%), Gaps = 6/223 (3%)
Strand=Plus/Plus
Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979
||||||||||||||||||||| |||| |||| || ||| | ||||| |||
Sbjct 18664 GTGCTCAAGCAGGTGCACCCCGACACCGG-----CATC-TCGTCGAAGGCAATGTCCATC 18717
Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039
||||||||||| ||||||||| | | || ||||||| | ||| ||| || || ||
Sbjct 18718 ATGAACTCGTTCGTCAACGACGTCTTTGAGCGCATCGCCGGCGAAGCCTCGCGTCTCGCT 18777
Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099
| || ||||||||| || || | ||||| ||||||||| |||| ||||| |||
Sbjct 18778 CACTACAACAAGCGATCGACCATTTCTTCCCGCGAAATCCAGACCTCCGTCCGCCTCATC 18837
Query 725100 ATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
| | ||||| || |||| ||||||||||||||||| ||||
Sbjct 18838 CTCCCTGGCGAGCTCGCCAAACACGCCGTCTCCGAGGGAACCA 18880
>seq3537
Length=139359
Score = 129 bits (142), Expect = 8e-24
Identities = 146/194 (75%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 2133558 GACGAGATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTG 2133617
|||||||||||| ||||||||| || || || ||||| | |||||||||||||| |
Sbjct 74136 GACGAGATGGTGCTGGTGCGCGACATCGAGTTCTTCTCTCTCTGCGAGCACCACCTTGTC 74077
Query 2133618 CCCTTTATCGGCAAGGCCCACGTGGGCTACCTGCCCGCGGGCAAGATCATCGGTCTGAGC 2133677
||||| |||||||| | ||| | |||||||||||| |||||| |||| || |||
Sbjct 74076 CCCTTCATCGGCAAAGTGCACATCGGCTACCTGCCCAACAAGAAGATCCTCGGCCTCAGC 74017
Query 2133678 AAGATCCCGCGCATCGTCGACATGTTTTCCGAC--CGCTTCCAAGTACAGGAGGCACTCA 2133735
|| || ||||||||||||| ||| ||| ||| || |||| || |||||| ||||
Sbjct 74016 AAACTCGCGCGCATCGTCGAGATG--TTCGGACGTCGGCTCCAGGTGCAGGAGCGCCTCA 73959
Query 2133736 CGCGCCAGATCGCC 2133749
| || ||||||
Sbjct 73958 CCAAGCAAATCGCC 73945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177248499977108
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |