Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq611 107 2e-18 seq616 105 6e-18 seq4364 93.3 4e-14 seq5007 89.7 5e-13 >seq611 Length=17302 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || | || ||||||||||| || || || Sbjct 4655 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCCAGCTGCTTTCCAGCGAA 4714 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | |||| | |||||||| |||||| ||||| | Sbjct 4715 AATCAATCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTCACGTT 4774 Query 35665 TGCCACCGTGT-CGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | |||| || || ||| ||||| | |||||||| || || ||||| || |||| Sbjct 4775 CTCGATGGTGTCCGATC-CTTCGACCTCGAGTGTGATCGTCTTGCCAGTCAAGGTCTTCA 4833 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 4834 CGAAGATCTGCAT 4846 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| ||| || || | || |||||||| || || || || Sbjct 5140 CTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCTTCCAGCTGTTTTCCGGCGAA 5199 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | |||| | ||||||||| ||| || ||||| | Sbjct 5200 GATGAGGCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATTTTGGCCTTCACGTT 5259 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || ||| ||| ||||| | ||||| ||||| || || | || ||||| Sbjct 5260 CTCAATGGTATCGGAACCTTCAACCTCAAGGGTGATGGTTTTTCCTGTGAGCGTCTTCAC 5319 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 5320 GAAGATCTGCAT 5331 >seq616 Length=1528 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || || ||||| |||| | ||| || | || ||||||||||| || || || Sbjct 909 TCCTTCTGGATATTGTAGTCGGAGAGGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAG 968 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| ||||||||||| | |||| | || || ||| |||||| ||||| | Sbjct 969 ATCAATCGCTGCTGGTCTGGGGGAATTCCTTCTTTATCCTGGATCTTGGCCTTCACGTTC 1028 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||||| |||||| |||| ||||| || || || ||||| || |||||| Sbjct 1029 TCAATCGTGTCGGAGCCTTCCACTTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACA 1088 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 1089 AAGATCTGCAT 1099 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| |||| ||| || || | || || |||||||| || || || Sbjct 1136 CTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAA 1195 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 ||||| ||||||||||| | ||||| | |||||||| |||||| Sbjct 1196 GATCAATCGCTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGGATCTT 1243 >seq4364 Length=177085 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||||||||||| | || || |||| || |||||||| || || || Sbjct 156956 TCCTTCTGGATGTTGTAATCGGAGAGAGTGCGACCGTCTTCGAGCTGCTTTCCGGCGAAG 157015 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| |||||||| || | ||||| || || ||||| |||||| ||||| | Sbjct 157016 ATCAAACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTC 157075 Query 35666 GCCACCGTGTCGCTCGA---TTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 | | ||||| ||| || || |||| |||||||| || || || | || ||| Sbjct 157076 TCAATGGTGTC---CGAACCCTCGACTTCCAGGGTGATCGTCTTGCCAGTGAGGGTCTTC 157132 Query 35723 ACAAATATCTGCATTC 35738 || || |||||||||| Sbjct 157133 ACGAAGATCTGCATTC 157148 >seq5007 Length=89527 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || ||||||||||| |||| | || || |||| || || ||||| || || || Sbjct 22067 CTCTTTCTGAATGTTGTAGTCGGAGAGCGTGCGTCCGTCCTCGAGTTGCTTTCCGGCGAA 22126 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | ||| | || |||||||| |||||| ||||| | Sbjct 22127 GATGAGGCGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTT 22186 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || ||| || ||||| | ||||||||| || || || | |||||||| Sbjct 22187 CTCGATGGTATCGGAGCCCTCAACCTCGAGCGTGATCGTCTTCCCTGTGAGGGTTTTCAC 22246 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 22247 AAAGATCTGCAT 22258 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| |||| | || || |||| || || ||||| || || || Sbjct 22295 CTCTTTCTGGATGTTGTAGTCGGAGAGCGTGCGTCCGTCCTCGAGTTGCTTTCCGGCGAA 22354 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | ||| | || |||||||| |||||| ||||| | Sbjct 22355 GATGAGGCGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTT 22414 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || ||| ||| ||||| | ||||||||| || || || | |||||||| Sbjct 22415 CTCGATGGTATCGGAGCCTTCGACCTCGAGCGTGATCGTCTTCCCTGTGAGGGTTTTCAC 22474 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 22475 AAAGATCTGCAT 22486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450760725876720