Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq871 116 4e-21
seq611 116 4e-21
seq4364 113 5e-20
seq616 113 5e-20
seq311 91.5 1e-13
seq5007 82.4 8e-11
>seq871
Length=2590
Score = 116 bits (128), Expect = 4e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545
||| || | ||| || | |||||| || | || ||||||||||| ||||||||||||
Sbjct 726 TCCACCACGGAGACGGAGCACGAGATGCAAAGTCGATTCCTTTTGGATGTTGTAGTCGTT 667
Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605
| ||| | ||| |||||||| || || || || ||||||||||||||||| || ||
Sbjct 666 GAGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGGGG 607
Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665
|| |||||||| || || || || || || || | |||| || ||||||
Sbjct 606 AATACCTTCTTTGTCCTGGATCTTCGCCTTTACGTTCTCGATGCTGTCAGAACCTTCCAC 547
Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714
|| || || || || || ||||| | || || ||||| || ||||||
Sbjct 546 TTCCAGGGTGATCGTCTTCCCGGTGAGGGTCTTCACGAAGATCTGCATT 498
>seq611
Length=17302
Score = 116 bits (128), Expect = 4e-21
Identities = 160/224 (71%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
||||| | ||| || | || ||||| || |||||||| || || ||||||||||||
Sbjct 5954 CCTCCGCGGAGCCGAAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 6013
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| || || |||||||| ||||| || ||||||| |||||||| || || ||
Sbjct 6014 AAAGTGCGACCATCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCTGGGGGA 6073
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| ||||| || ||||| ||||| || || || | ||||| || ||| ||
Sbjct 6074 ATTCCTTCCTTATCTTGGATTTTGGCCTTCACGTTCTCAATCGTGTCAGAGCCTTCGACC 6133
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTG 134710
|| ||||| || || || ||||| | ||||| ||||| || ||
Sbjct 6134 TCAAGAGTGATCGTCTTTCCGGTGAGCGTTTTGACGAAGATCTG 6177
Score = 113 bits (124), Expect = 5e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
||||||| ||| || | ||||| || || ||||||||||| ||||||||||| ||
Sbjct 5333 CCTCCTCGGAGACGAAGGACGAGATGGAGAGTGGATTCCTTCTGAATGTTGTAATCCGAG 5392
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| |||| | || || | ||| || || || || ||||| ||||||||||| || ||
Sbjct 5393 AGGGTGCGGCCATCTTCCAACTGCTTTCCGGCGAAGATCAATCGCTGCTGATCTGGGGGA 5452
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| ||||| || ||||| || || || || || | || || || ||| ||
Sbjct 5453 ATTCCTTCCTTATCTTGGATCTTGGCCTTCACGTTCTCGATGGTATCCGAACCTTCAACC 5512
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || |||||||| ||||| | ||||| ||||| || |||||
Sbjct 5513 TCAAGGGTGATGGTTTTTCCGGTGAGCGTTTTGACGAAGATCTGCAT 5559
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | |||||| | || || || || || || ||||| || ||||||||||||
Sbjct 4620 CCACCACGGAGTCGGAGGACAAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAG 4679
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| |||| || || || ||||| || || || |||||||| |||||||| || || ||
Sbjct 4680 AGGGTGCGACCATCTTCCAGCTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCTGGGGGA 4739
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| ||||| || ||||| || || || || || | ||||| || ||| ||
Sbjct 4740 ATTCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTGTCCGATCCTTCGACC 4799
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| || || || || || || || || || ||||| || |||||
Sbjct 4800 TCGAGTGTGATCGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 4846
Score = 102 bits (112), Expect = 8e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
|||||||| ||||| |||||||| || ||||||||||| | |||| || || |||
Sbjct 4410 ACGAGGTGGAGCGTTGATTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGACCATCCTCG 4469
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
||||| || || || || || | ||||| || || || || || ||||| || |||||
Sbjct 4470 AGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCTGGGGGAATTCCTTCCTTGTCTTGG 4529
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| || || || || | ||||| || ||| || || || |||||||| ||
Sbjct 4530 ATCTTGGCCTTCACGTTCTCGATAGTGTCCGATCCTTCGACTTCCAGGGTAATGGTCTTG 4589
Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || | || || |||||||| |||||
Sbjct 4590 CCAGTGAGCGTCTTCACGAAAATCTGCAT 4618
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
||||| | || || | ||||| || || || || ||||| || |||||||||||
Sbjct 9637 CCTCCGCGAAGACGAAGGACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAG 9696
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| |||| | || |||||||| || || || || || | ||||||||||| || ||
Sbjct 9697 AGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCTGGGGGA 9756
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| ||||| || || || || || || || || | ||||| || | || ||
Sbjct 9757 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGCCTCGACC 9816
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714
||||| || ||||| || || || | ||||| ||||| |||||||||
Sbjct 9817 TCGAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACGAAGATTTGCATT 9864
Score = 82.4 bits (90), Expect = 8e-11
Identities = 138/200 (69%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
||||| || || || || ||||| |||||||||||||| | ||| | || ||
Sbjct 9250 ACGAGATGGAGAGTCGACTCCTTCTGAATGTTGTAGTCCGAGAGAGTGCGGCCATCTTCC 9309
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
||||| || || || ||||| | |||||||| || || || || ||||| || || ||
Sbjct 9310 AGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 9369
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| || ||||| || | |||||||| ||| || ||||| || ||||| ||
Sbjct 9370 ATCTTGGCCTTGACATTTTCAATAGTGTCGGAACCTTCAACCTCGAGGGTGATGGTCTTT 9429
Query 134685 CCGGTTAAAGTTTTAACGAA 134704
|| || | || || |||||
Sbjct 9430 CCAGTGAGGGTCTTCACGAA 9449
>seq4364
Length=177085
Score = 113 bits (124), Expect = 5e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544
|||| || | ||||| | ||||| || || || |||||||| || |||||||| |||
Sbjct 156918 TTCCACCGCGAAGTCGGAGTACGAGATGGAGGGTCGATTCCTTCTGGATGTTGTAATCGG 156977
Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604
| ||| || ||| |||||||| || || || || ||||||||||||||||| || |
Sbjct 156978 AGAGAGTGCGACCGTCTTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAG 157037
Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664
| ||||||||||| ||||| || || || || || | ||||| || || |
Sbjct 157038 GAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCCGAACCCTCGA 157097
Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714
| || || || || || || || || | || || ||||| || ||||||
Sbjct 157098 CTTCCAGGGTGATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATT 157147
>seq616
Length=1528
Score = 113 bits (124), Expect = 5e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
||||| | || || | ||||| || || || || ||||| |||||||||||||||
Sbjct 1101 CCTCCGCGAAGCCGAAGGACGAGATGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGAC 1160
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| | || |||||||| || || || || ||||| |||||||| || || ||
Sbjct 1161 AAAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGAGGA 1220
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| ||||| || ||||| || || |||||| || | ||||| || ||| ||
Sbjct 1221 ATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTCTCGATGGTGTCAGAGCCTTCAACT 1280
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| |||||||| || || ||||| | || || ||||| || |||||
Sbjct 1281 TCAAGAGTAATCGTCTTTCCGGTGAGCGTCTTGACGAAGATCTGCAT 1327
Score = 105 bits (116), Expect = 7e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
||||| | |||||| | ||||| || || |||||||| || || ||||||||||| |
Sbjct 367 CCTCCGCGGAGTCGGAGGACGAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCCGAA 426
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| |||| | || || ||||| || || || ||||| | |||||||| || || ||
Sbjct 427 AGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCTGGGGGG 486
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| ||||| || ||||| || || || || || | ||||| || ||||||
Sbjct 487 ATTCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTGTCCGAGCCTTCCACT 546
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714
|| | || || || || ||||| | ||||| ||||| || ||||||
Sbjct 547 TCCAAGGTGATCGTCTTGCCGGTGAGCGTTTTGACGAAGATCTGCATT 594
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
||||| | ||| || | ||||| || || || |||||||| || ||||||||||||
Sbjct 139 CCTCCGCGGAGCCGAAGGACGAGATGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAC 198
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| || || |||||||| || || || ||||| | |||||||| || || ||
Sbjct 199 AAAGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCTGGGGGA 258
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| |||||||| || || || || |||||| || | || || || || ||
Sbjct 259 ATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCAGAGCCCTCGACC 318
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || ||||| || || || || | || || ||||| || |||||
Sbjct 319 TCCAGGGTAATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 365
>seq311
Length=48857
Score = 91.5 bits (100), Expect = 1e-13
Identities = 130/183 (71%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 134532 ATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGC 134591
|||||||||||| | ||| | ||| |||||||| || || || || ||||| |||
Sbjct 16787 ATGTTGTAGTCGTTGAGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAAGCGC 16728
Query 134592 TGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTG 134651
|||||||| || || ||||| || || || || || || || || || | ||
Sbjct 16727 TGCTGATCTGGAGGAATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGCTG 16668
Query 134652 TCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGC 134711
|| || | ||| || ||||| |||||||| || ||||| | || || ||||| || |||
Sbjct 16667 TCAGAAGCTTCGACTTCGAGGGTAATGGTCTTCCCGGTGAGGGTCTTCACGAAGATCTGC 16608
Query 134712 ATT 134714
|||
Sbjct 16607 ATT 16605
Score = 87.8 bits (96), Expect = 2e-12
Identities = 99/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544
|||| || | ||| || | ||||| || || || |||||||| || ||||||||||||
Sbjct 17164 TTCCACCACGGAGGCGGAGTACGAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGG 17105
Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604
| || | ||| |||||||| || || || || ||||||||||||||||| || |
Sbjct 17104 AGAGAGTTCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAG 17045
Query 134605 GTATGCCTTCTTT 134617
| || ||||| ||
Sbjct 17044 GAATTCCTTCCTT 17032
>seq5007
Length=89527
Score = 82.4 bits (90), Expect = 8e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543
||||| || | || || | ||||| || || || || || || |||||||||||||||
Sbjct 22029 TTTCCCCCACGCAGACGAAGGACGAGATGGAGGGTCGACTCTTTCTGAATGTTGTAGTCG 22088
Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603
| ||| | ||| ||||| || || || || || || | |||||||| || ||
Sbjct 22089 GAGAGCGTGCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGA 22148
Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663
|| |||||||| || ||||| || || || || || | || ||||| ||
Sbjct 22149 GGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAGCCCTCA 22208
Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| ||||| || || || || || || | ||||| || || || |||||
Sbjct 22209 ACCTCGAGCGTGATCGTCTTCCCTGTGAGGGTTTTCACAAAGATCTGCAT 22258
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505361543821680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |