Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq871 116 4e-21 seq611 116 4e-21 seq4364 113 5e-20 seq616 113 5e-20 seq311 91.5 1e-13 seq5007 82.4 8e-11 >seq871 Length=2590 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 ||| || | ||| || | |||||| || | || ||||||||||| |||||||||||| Sbjct 726 TCCACCACGGAGACGGAGCACGAGATGCAAAGTCGATTCCTTTTGGATGTTGTAGTCGTT 667 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | ||| | ||| |||||||| || || || || ||||||||||||||||| || || Sbjct 666 GAGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGGGG 607 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| || || || || || || || | |||| || |||||| Sbjct 606 AATACCTTCTTTGTCCTGGATCTTCGCCTTTACGTTCTCGATGCTGTCAGAACCTTCCAC 547 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || || || || ||||| | || || ||||| || |||||| Sbjct 546 TTCCAGGGTGATCGTCTTCCCGGTGAGGGTCTTCACGAAGATCTGCATT 498 >seq611 Length=17302 Score = 116 bits (128), Expect = 4e-21 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | || ||||| || |||||||| || || |||||||||||| Sbjct 5954 CCTCCGCGGAGCCGAAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 6013 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || |||||||| ||||| || ||||||| |||||||| || || || Sbjct 6014 AAAGTGCGACCATCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCTGGGGGA 6073 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| ||||| || || || | ||||| || ||| || Sbjct 6074 ATTCCTTCCTTATCTTGGATTTTGGCCTTCACGTTCTCAATCGTGTCAGAGCCTTCGACC 6133 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTG 134710 || ||||| || || || ||||| | ||||| ||||| || || Sbjct 6134 TCAAGAGTGATCGTCTTTCCGGTGAGCGTTTTGACGAAGATCTG 6177 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||||| ||| || | ||||| || || ||||||||||| ||||||||||| || Sbjct 5333 CCTCCTCGGAGACGAAGGACGAGATGGAGAGTGGATTCCTTCTGAATGTTGTAATCCGAG 5392 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || | ||| || || || || ||||| ||||||||||| || || Sbjct 5393 AGGGTGCGGCCATCTTCCAACTGCTTTCCGGCGAAGATCAATCGCTGCTGATCTGGGGGA 5452 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| || || || || || | || || || ||| || Sbjct 5453 ATTCCTTCCTTATCTTGGATCTTGGCCTTCACGTTCTCGATGGTATCCGAACCTTCAACC 5512 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || |||||||| ||||| | ||||| ||||| || ||||| Sbjct 5513 TCAAGGGTGATGGTTTTTCCGGTGAGCGTTTTGACGAAGATCTGCAT 5559 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | |||||| | || || || || || || ||||| || |||||||||||| Sbjct 4620 CCACCACGGAGTCGGAGGACAAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAG 4679 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || || || ||||| || || || |||||||| |||||||| || || || Sbjct 4680 AGGGTGCGACCATCTTCCAGCTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCTGGGGGA 4739 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| || || || || || | ||||| || ||| || Sbjct 4740 ATTCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTGTCCGATCCTTCGACC 4799 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || || || || || || ||||| || ||||| Sbjct 4800 TCGAGTGTGATCGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 4846 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| ||||| |||||||| || ||||||||||| | |||| || || ||| Sbjct 4410 ACGAGGTGGAGCGTTGATTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGACCATCCTCG 4469 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || || || || | ||||| || || || || || ||||| || ||||| Sbjct 4470 AGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCTGGGGGAATTCCTTCCTTGTCTTGG 4529 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || || | ||||| || ||| || || || |||||||| || Sbjct 4530 ATCTTGGCCTTCACGTTCTCGATAGTGTCCGATCCTTCGACTTCCAGGGTAATGGTCTTG 4589 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || || |||||||| ||||| Sbjct 4590 CCAGTGAGCGTCTTCACGAAAATCTGCAT 4618 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | ||||| || || || || ||||| || ||||||||||| Sbjct 9637 CCTCCGCGAAGACGAAGGACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAG 9696 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || |||||||| || || || || || | ||||||||||| || || Sbjct 9697 AGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCTGGGGGA 9756 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || || || || || || | ||||| || | || || Sbjct 9757 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGCCTCGACC 9816 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || ||||| || || || | ||||| ||||| ||||||||| Sbjct 9817 TCGAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACGAAGATTTGCATT 9864 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 ||||| || || || || ||||| |||||||||||||| | ||| | || || Sbjct 9250 ACGAGATGGAGAGTCGACTCCTTCTGAATGTTGTAGTCCGAGAGAGTGCGGCCATCTTCC 9309 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || || ||||| | |||||||| || || || || ||||| || || || Sbjct 9310 AGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 9369 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| || | |||||||| ||| || ||||| || ||||| || Sbjct 9370 ATCTTGGCCTTGACATTTTCAATAGTGTCGGAACCTTCAACCTCGAGGGTGATGGTCTTT 9429 Query 134685 CCGGTTAAAGTTTTAACGAA 134704 || || | || || ||||| Sbjct 9430 CCAGTGAGGGTCTTCACGAA 9449 >seq4364 Length=177085 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | ||||| | ||||| || || || |||||||| || |||||||| ||| Sbjct 156918 TTCCACCGCGAAGTCGGAGTACGAGATGGAGGGTCGATTCCTTCTGGATGTTGTAATCGG 156977 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| || ||| |||||||| || || || || ||||||||||||||||| || | Sbjct 156978 AGAGAGTGCGACCGTCTTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAG 157037 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | ||||||||||| ||||| || || || || || | ||||| || || | Sbjct 157038 GAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCCGAACCCTCGA 157097 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || || || || || || || || | || || ||||| || |||||| Sbjct 157098 CTTCCAGGGTGATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATT 157147 >seq616 Length=1528 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | ||||| || || || || ||||| ||||||||||||||| Sbjct 1101 CCTCCGCGAAGCCGAAGGACGAGATGGAGGGTTGACTCCTTCTGAATGTTGTAGTCGGAC 1160 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || |||||||| || || || || ||||| |||||||| || || || Sbjct 1161 AAAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGAGGA 1220 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| || || |||||| || | ||||| || ||| || Sbjct 1221 ATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTCTCGATGGTGTCAGAGCCTTCAACT 1280 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||||||| || || ||||| | || || ||||| || ||||| Sbjct 1281 TCAAGAGTAATCGTCTTTCCGGTGAGCGTCTTGACGAAGATCTGCAT 1327 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | |||||| | ||||| || || |||||||| || || ||||||||||| | Sbjct 367 CCTCCGCGGAGTCGGAGGACGAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCCGAA 426 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| || || || ||||| | |||||||| || || || Sbjct 427 AGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCTGGGGGG 486 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| || || || || || | ||||| || |||||| Sbjct 487 ATTCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTGTCCGAGCCTTCCACT 546 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || | || || || || ||||| | ||||| ||||| || |||||| Sbjct 547 TCCAAGGTGATCGTCTTGCCGGTGAGCGTTTTGACGAAGATCTGCATT 594 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | ||||| || || || |||||||| || |||||||||||| Sbjct 139 CCTCCGCGGAGCCGAAGGACGAGATGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAC 198 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || |||||||| || || || ||||| | |||||||| || || || Sbjct 199 AAAGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCTGGGGGA 258 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| || || || || |||||| || | || || || || || Sbjct 259 ATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCAGAGCCCTCGACC 318 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| || || || || | || || ||||| || ||||| Sbjct 319 TCCAGGGTAATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 365 >seq311 Length=48857 Score = 91.5 bits (100), Expect = 1e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 134532 ATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGC 134591 |||||||||||| | ||| | ||| |||||||| || || || || ||||| ||| Sbjct 16787 ATGTTGTAGTCGTTGAGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAAGCGC 16728 Query 134592 TGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTG 134651 |||||||| || || ||||| || || || || || || || || || | || Sbjct 16727 TGCTGATCTGGAGGAATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGCTG 16668 Query 134652 TCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGC 134711 || || | ||| || ||||| |||||||| || ||||| | || || ||||| || ||| Sbjct 16667 TCAGAAGCTTCGACTTCGAGGGTAATGGTCTTCCCGGTGAGGGTCTTCACGAAGATCTGC 16608 Query 134712 ATT 134714 ||| Sbjct 16607 ATT 16605 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | ||| || | ||||| || || || |||||||| || |||||||||||| Sbjct 17164 TTCCACCACGGAGGCGGAGTACGAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGG 17105 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | || | ||| |||||||| || || || || ||||||||||||||||| || | Sbjct 17104 AGAGAGTTCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAG 17045 Query 134605 GTATGCCTTCTTT 134617 | || ||||| || Sbjct 17044 GAATTCCTTCCTT 17032 >seq5007 Length=89527 Score = 82.4 bits (90), Expect = 8e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | || || | ||||| || || || || || || ||||||||||||||| Sbjct 22029 TTTCCCCCACGCAGACGAAGGACGAGATGGAGGGTCGACTCTTTCTGAATGTTGTAGTCG 22088 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | ||| | ||| ||||| || || || || || || | |||||||| || || Sbjct 22089 GAGAGCGTGCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGA 22148 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || |||||||| || ||||| || || || || || | || ||||| || Sbjct 22149 GGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAGCCCTCA 22208 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || || || || || || | ||||| || || || ||||| Sbjct 22209 ACCTCGAGCGTGATCGTCTTCCCTGTGAGGGTTTTCACAAAGATCTGCAT 22258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505361543821680