Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5716 159 5e-34 seq5071 120 4e-22 >seq5716 Length=132174 Score = 159 bits (176), Expect = 5e-34 Identities = 489/758 (65%), Gaps = 21/758 (3%) Strand=Plus/Minus Query 68698 AGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTA 68757 |||||||| || ||||| ||||| || || ||||| | ||| | ||| ||||||| || Sbjct 122704 AGGAGATGAGGGTTAACGATTTGGAAGTCTCCAGACAGCACGCGTCGACTGTAAATGTTG 122645 Query 68758 CTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGC 68817 || || || || | |||||||| ||||| || |||||||| |||||||| || ||| Sbjct 122644 GACGTGTACGGCTCGATGGATTCATTGTTTCCAAGGATTTGAGCGGTTGATGCGGTCGGC 122585 Query 68818 ATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGT 68877 || || || | | | ||| || | | || || | |||||| ||||| ||| | Sbjct 122584 ATCGGGGCAAGAAGCAGACTGTTGCGTACCCCGTGCTTCGCGATTTTCTCTTTGAGAGAT 122525 Query 68878 TTCCAATCCCAAAGATCAGATGGTACAACA------------------TTCCAAAGATCG 68919 ||| || || |||| | || || || | ||| | || Sbjct 122524 GCCCAGTCACACTGATCTGTAGGGACGACTGGTTTGCCGTCTTCTGTTTGCCACATTTCA 122465 Query 68920 TATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGT 68979 || || |||||||| | || | || || | ||| ||||| ||||| || | | Sbjct 122464 TACTGCAGAATTCCTTGGCTCACTGGAGACCCCTCATAGGTTTCGTAAGGACCATATTTC 122405 Query 68980 TCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTA 69039 ||||| ||||| || || || | || |||| ||||||||||| || || ||| Sbjct 122404 TCAGCAAGTTCGCATGACGCTTCCAGAGCTGCGTAGTAAATTGTTTCAAAGATTCGCTTG 122345 Query 69040 TTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCC 69099 || | |||| | || | | || ||| || | | | || || || ||||| ||| Sbjct 122344 TTCACATCTCGAGCCTGAGGGCTGGTGAACGGGTGGCGCATTAGCATGAAGGCATCAGCC 122285 Query 69100 AATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGA 69159 || |||||||| || || || || || | ||| | ||| || || |||||||||| || Sbjct 122284 AAACCCTGAACTCCGATTCCTATTGGGCGATGACGCTTGTTAGAGGTTTCAGCTTCCGGT 122225 Query 69160 ATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACG 69219 |||||||| || || || || ||||| || | ||| || | || || | Sbjct 122224 ATAGGATAGTAGTTGCAGTCAATTATTTTGTTCAAATTGCGTGTGATGACCTTGGTAATC 122165 Query 69220 TCCTTTAGTTTGAGAAAATCAAA--TCGT-CCATCTATAACAAACATATTCAGTGCTACA 69276 || | || || | | || || || | |||| | ||||| | |||| || || Sbjct 122164 TCGTGAAGCTTTTCATAGTCGAAGGTCTTGTCATCCTTCACAAATCTGTTCAAAGCGACG 122105 Query 69277 GATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACAT 69336 || || ||||| ||||| || || |||| | | || || | ||| || || || Sbjct 122104 GAGGCCAGATTGCAAACAGCGACTTCATCTGGGGACGAGTACTGCACTATTTCGGTGCAC 122045 Query 69337 AGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCC 69396 ||||| || ||||| || |||| ||| | ||| ||| |||| || || || || Sbjct 122044 AGATTTGAGCACTTGATCGTTCCCAAATTCTTCTGGTTAGACTTTCGATTGCATGCATCT 121985 Query 69397 TTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434 |||||||| || | ||||| || ||||| ||||| || Sbjct 121984 TTGTAAAGCATGTAAGGAGTTCCGGTTTCGATCTGCGA 121947 Score = 107 bits (118), Expect = 3e-18 Identities = 172/246 (70%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| ||||| || | ||||| | |||||| || ||||| || || | || || Sbjct 121133 AGTTCCGGCATTGAAAAGCGTAGGCGTTGCGTGTGTAAACCAGCGATCGGACATTAGGTT 121074 Query 70050 GTATGTTTCAATAGCTGATTCTAT---ATCCCACTGATGAATTCCTATCGCGACACGCAT 70106 ||| ||||||||||| | ||| || ||| | || || || | ||||| ||||| Sbjct 121073 GTAAGTTTCAATAGCGGCTTCAATTGAATC---TTTGTGGATACCCACAGCGACTCGCAT 121017 Query 70107 CAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTC 70166 || || ||||| || || || || ||| | || |||||||||| ||| || || Sbjct 121016 CAGCAAGTGCTGTGGACGCTCAACAACTTTTTGGTTGATTTTCAACAAGTAAGAGCGCTC 120957 Query 70167 CAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATT 70226 || ||||| || || ||||| |||||||||| || | ||||| | |||| | ||||| Sbjct 120956 CAACGTTTTGAAACCGAAATACGTGTATGAAAAATCGCGATCGTAGACAATAGCTGAATT 120897 Query 70227 TAGTTT 70232 | ||| Sbjct 120896 CAATTT 120891 >seq5071 Length=368534 Score = 120 bits (132), Expect = 4e-22 Identities = 210/301 (70%), Gaps = 6/301 (2%) Strand=Plus/Plus Query 39462 ATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCT 39521 |||| |||||||| ||| | ||| ||||| || || | | || || || | | Sbjct 134946 ATTCGATGTATGTAGACATAAGACGACAGTTCATCCCAATCATGTCCACAGGAAGGGATT 135005 Query 39522 CCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGATGTT-ACTACCTCA 39580 || | | |||| || |||||| |||||||||| || || |||||| ||| | || Sbjct 135006 GGGTCAAATACTCCTTCTCGATGGTTACGGCCTCTCGGATAAT-GATGTTTACTTCTTCT 135064 Query 39581 TCACTCGGTGGATGCAATAAATGT--TTAAACATTAAGCAGGCGAAGTCACAATGTAGGC 39638 | ||||| | || || || || |||| | ||| |||||||| | |||||||| Sbjct 135065 TGGTTCGGTTTCTC--ATCAAGGTACTTGTACATGAGGCATGCGAAGTCGCGATGTAGGC 135122 Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 | ||||| | ||| | |||||| ||||| |||||||| ||||||||||||| Sbjct 135123 CTTCATCCCGGGAAATGAGTTCGTTGCTGTGGGTGAGGCCAGGCATGAGACCACGCTTTT 135182 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||| ||||||||||| || ||||| || ||||| ||||| || || || || || | Sbjct 135183 TCAACCAGAATATGGCAGCGAACGATCCTGAGAAGAAAATGCCCTCCACAGCAGCGAAGG 135242 Query 39759 C 39759 | Sbjct 135243 C 135243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686858707175760