Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq5716 159 5e-34
seq5071 120 4e-22
>seq5716
Length=132174
Score = 159 bits (176), Expect = 5e-34
Identities = 489/758 (65%), Gaps = 21/758 (3%)
Strand=Plus/Minus
Query 68698 AGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTA 68757
|||||||| || ||||| ||||| || || ||||| | ||| | ||| ||||||| ||
Sbjct 122704 AGGAGATGAGGGTTAACGATTTGGAAGTCTCCAGACAGCACGCGTCGACTGTAAATGTTG 122645
Query 68758 CTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGC 68817
|| || || || | |||||||| ||||| || |||||||| |||||||| || |||
Sbjct 122644 GACGTGTACGGCTCGATGGATTCATTGTTTCCAAGGATTTGAGCGGTTGATGCGGTCGGC 122585
Query 68818 ATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGT 68877
|| || || | | | ||| || | | || || | |||||| ||||| ||| |
Sbjct 122584 ATCGGGGCAAGAAGCAGACTGTTGCGTACCCCGTGCTTCGCGATTTTCTCTTTGAGAGAT 122525
Query 68878 TTCCAATCCCAAAGATCAGATGGTACAACA------------------TTCCAAAGATCG 68919
||| || || |||| | || || || | ||| | ||
Sbjct 122524 GCCCAGTCACACTGATCTGTAGGGACGACTGGTTTGCCGTCTTCTGTTTGCCACATTTCA 122465
Query 68920 TATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGT 68979
|| || |||||||| | || | || || | ||| ||||| ||||| || | |
Sbjct 122464 TACTGCAGAATTCCTTGGCTCACTGGAGACCCCTCATAGGTTTCGTAAGGACCATATTTC 122405
Query 68980 TCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTA 69039
||||| ||||| || || || | || |||| ||||||||||| || || |||
Sbjct 122404 TCAGCAAGTTCGCATGACGCTTCCAGAGCTGCGTAGTAAATTGTTTCAAAGATTCGCTTG 122345
Query 69040 TTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCC 69099
|| | |||| | || | | || ||| || | | | || || || ||||| |||
Sbjct 122344 TTCACATCTCGAGCCTGAGGGCTGGTGAACGGGTGGCGCATTAGCATGAAGGCATCAGCC 122285
Query 69100 AATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGA 69159
|| |||||||| || || || || || | ||| | ||| || || |||||||||| ||
Sbjct 122284 AAACCCTGAACTCCGATTCCTATTGGGCGATGACGCTTGTTAGAGGTTTCAGCTTCCGGT 122225
Query 69160 ATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACG 69219
|||||||| || || || || ||||| || | ||| || | || || |
Sbjct 122224 ATAGGATAGTAGTTGCAGTCAATTATTTTGTTCAAATTGCGTGTGATGACCTTGGTAATC 122165
Query 69220 TCCTTTAGTTTGAGAAAATCAAA--TCGT-CCATCTATAACAAACATATTCAGTGCTACA 69276
|| | || || | | || || || | |||| | ||||| | |||| || ||
Sbjct 122164 TCGTGAAGCTTTTCATAGTCGAAGGTCTTGTCATCCTTCACAAATCTGTTCAAAGCGACG 122105
Query 69277 GATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACAT 69336
|| || ||||| ||||| || || |||| | | || || | ||| || || ||
Sbjct 122104 GAGGCCAGATTGCAAACAGCGACTTCATCTGGGGACGAGTACTGCACTATTTCGGTGCAC 122045
Query 69337 AGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCC 69396
||||| || ||||| || |||| ||| | ||| ||| |||| || || || ||
Sbjct 122044 AGATTTGAGCACTTGATCGTTCCCAAATTCTTCTGGTTAGACTTTCGATTGCATGCATCT 121985
Query 69397 TTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434
|||||||| || | ||||| || ||||| ||||| ||
Sbjct 121984 TTGTAAAGCATGTAAGGAGTTCCGGTTTCGATCTGCGA 121947
Score = 107 bits (118), Expect = 3e-18
Identities = 172/246 (70%), Gaps = 6/246 (2%)
Strand=Plus/Minus
Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049
|||||| ||||| || | ||||| | |||||| || ||||| || || | || ||
Sbjct 121133 AGTTCCGGCATTGAAAAGCGTAGGCGTTGCGTGTGTAAACCAGCGATCGGACATTAGGTT 121074
Query 70050 GTATGTTTCAATAGCTGATTCTAT---ATCCCACTGATGAATTCCTATCGCGACACGCAT 70106
||| ||||||||||| | ||| || ||| | || || || | ||||| |||||
Sbjct 121073 GTAAGTTTCAATAGCGGCTTCAATTGAATC---TTTGTGGATACCCACAGCGACTCGCAT 121017
Query 70107 CAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTC 70166
|| || ||||| || || || || ||| | || |||||||||| ||| || ||
Sbjct 121016 CAGCAAGTGCTGTGGACGCTCAACAACTTTTTGGTTGATTTTCAACAAGTAAGAGCGCTC 120957
Query 70167 CAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATT 70226
|| ||||| || || ||||| |||||||||| || | ||||| | |||| | |||||
Sbjct 120956 CAACGTTTTGAAACCGAAATACGTGTATGAAAAATCGCGATCGTAGACAATAGCTGAATT 120897
Query 70227 TAGTTT 70232
| |||
Sbjct 120896 CAATTT 120891
>seq5071
Length=368534
Score = 120 bits (132), Expect = 4e-22
Identities = 210/301 (70%), Gaps = 6/301 (2%)
Strand=Plus/Plus
Query 39462 ATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCT 39521
|||| |||||||| ||| | ||| ||||| || || | | || || || | |
Sbjct 134946 ATTCGATGTATGTAGACATAAGACGACAGTTCATCCCAATCATGTCCACAGGAAGGGATT 135005
Query 39522 CCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGATGTT-ACTACCTCA 39580
|| | | |||| || |||||| |||||||||| || || |||||| ||| | ||
Sbjct 135006 GGGTCAAATACTCCTTCTCGATGGTTACGGCCTCTCGGATAAT-GATGTTTACTTCTTCT 135064
Query 39581 TCACTCGGTGGATGCAATAAATGT--TTAAACATTAAGCAGGCGAAGTCACAATGTAGGC 39638
| ||||| | || || || || |||| | ||| |||||||| | ||||||||
Sbjct 135065 TGGTTCGGTTTCTC--ATCAAGGTACTTGTACATGAGGCATGCGAAGTCGCGATGTAGGC 135122
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
| ||||| | ||| | |||||| ||||| |||||||| |||||||||||||
Sbjct 135123 CTTCATCCCGGGAAATGAGTTCGTTGCTGTGGGTGAGGCCAGGCATGAGACCACGCTTTT 135182
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| | ||| ||||||||||| || ||||| || ||||| ||||| || || || || || |
Sbjct 135183 TCAACCAGAATATGGCAGCGAACGATCCTGAGAAGAAAATGCCCTCCACAGCAGCGAAGG 135242
Query 39759 C 39759
|
Sbjct 135243 C 135243
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686858707175760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |