Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq1811 185 2e-42 >seq1811 Length=36858 Score = 185 bits (204), Expect = 2e-42 Identities = 549/830 (66%), Gaps = 24/830 (3%) Strand=Plus/Plus Query 8408 CCGGCGCGGTGGCTGCAATGGCGGATGAGCCGTTTGATTATATCGGCCTGCCGTTCAACG 8467 ||| |||| |||| || ||| ||||| |||||||| | ||| | | ||| | | || Sbjct 22781 CCGCCGCGCTGGCGGCGTTGGGTGATGAACCGTTTGAATTCATCTGTCAGCCCTGGAGCG 22840 Query 8468 ACACGGCCTCCGTTAACACGCTGGTGACCGA-GATGAACGATACCAGCGGTCGCTGGAGC 8526 | |||||| | | || | |||| | ||| |||| ||||||| ||| |||||| | Sbjct 22841 ATACGGCCACGCTCGACGC-CTGGAAAGCGACGATGGACGATACGGCCGGGCGCTGGTCC 22899 Query 8527 TATGCGCGTCAGCTGTATGGTCATGTGTACACGGCAAAGATCGGCA-CGCTGTCAGAACT 8585 | || ||||| ||||| ||||| |||| || ||| ||| | || | | || || Sbjct 22900 TGGGCCAAGCAGCTCTATGGCCATGTTTACAGCGCCAAGCGCGGTAGCGTCGGC-GAGCT 22958 Query 8586 GGTGACCGCAGGT--GACCAGTTTAACCAGCAGCACATTACCCTGGCGGGATACGAAAAA 8643 |||| |||| || | || | ||| | |||||||| || || || | |||| Sbjct 22959 GGTGGCCGCCGGCCGGGCCCGC--AACGACCAGCACATGACTTTGCACGGCTTCGAACGC 23016 Query 8644 GAGA---CCCAGACGCCTGCCGACGAGCTGGCGGCAAGCCGTACCGCCCGCGCA--GCGG 8698 | | ||||| || || | || |||| || || |||| |||| | |||| Sbjct 23017 GGGTTGCCCCAGCCGG-TGTGG--GAAGTGGCCGC--GCAGTACGCGGCGCGAACGGCGG 23071 Query 8699 TGTTTATTCGCAACGATCCGGCACGTCCCACGCAGACCGGTGAGCTGGTGGGTATGCTGC 8758 |||| || | ||| || | || || ||||||||||| ||| ||| || | Sbjct 23072 TGTTCATCAGTGCCGACCCCGGCCGGCCAACGCAGACCGGCACCCTGTCGGGCATTGATC 23131 Query 8759 CTGCGCCGAAGGGGAAACGGTTCACGATGACCGAACAACAGACCCTGCTGTCTCATGGCG 8818 | || ||| | | || || || ||||||| | || | |||||| | ||| Sbjct 23132 CGGCCCCGGCCAGCGACCGCTTTACACTGACCGAGCGTCAATCGCTGCTGAGCTACGGCA 23191 Query 8819 TGGCAACGGCGTATGTCGAAAGCGGGGTGCTGCGCATTCAGCGTGATGTCACCACGTACA 8878 | || || ||||| ||| |||| | ||||||||||| | || || |||||| Sbjct 23192 TTGCTACCGCGTACTACGAGGGCGGTTCGTACCGCATTCAGCGCGCCGTGACGACGTACC 23251 Query 8879 GGAAAAACGCTTACGGTGTTGCGGATAACAGCTACCTCGACAGCGAGACGCTGCATACCA 8938 | ||||| ||||| || |||| ||| || ||||||||| |||||| |||| Sbjct 23252 AGCGCAACGCATACGGCCAGGCCGATACGTCCTATCTGGACAGCGAGCCGCTGC--ACCA 23309 Query 8939 G--CGCGTATGTACTGCGCAAACTG-AAATCCGTCATTACCAGTAAGTACGGGCGTCACA 8995 | ||| | || | ||||| ||| || |||| |||||||| || ||||| ||||||| Sbjct 23310 GTCGGCGCACGTGATTCGCAACCTGCAAGGCCGT-ATTACCAGCAAATACGGCCGTCACA 23368 Query 8996 AGCTTGCCAGCGACGGTACCCGCTTTGGTCCCGGTCAGGCGATTGTCACCCCGGCGGTGA 9055 |||| |||| ||| || ||| ||| || |||||||| || || || ||| ||||| Sbjct 23369 AGCTGGCCAACGATGGCACCGCCTTCGGCGATGGTCAGGCCATCGTGACGCCGTTGGTGA 23428 Query 9056 TCAAAGGGGAACTGCTGGCAACCTACCGTCAGCTTGAGCGTGCGGGGATCGTGGAAAACT 9115 || || || ||| |||| ||||| | |||| ||||| || || | || || ||| Sbjct 23429 TCCGTGGCGAGCTGGTGGCGGCCTACGGCGAGCTGGAGCGCGCCGGCCTGGTCGAGAACA 23488 Query 9116 ACGAACTTTTTAAGCAGTACCTGGTTGTGGAGCGTGATGCCAGCGATCCGAACCGCCTGA 9175 || || || ||||| ||||| | || ||||| || || | || |||||||| | Sbjct 23489 TGGAGCTGTTCAAGCAACACCTGATCGTTGAGCGCGACGCGAAAGACCCGAACCGAATCG 23548 Query 9176 ACACGCTGTTCCCGCCTGACTATGTTAACCAGTTGCGTGTCTTTGCCGTG 9225 |||||||||||| || || |||||| |||| ||| | ||| || Sbjct 23549 CGGTGCTGTTCCCGCCGGATCTGGTCAACCAGCTGCGCGTCCTGGCCCTG 23598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122714697890108