Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_027339.1
Length=38389
Score E
Sequences producing significant alignments: (Bits) Value
seq1811 185 2e-42
>seq1811
Length=36858
Score = 185 bits (204), Expect = 2e-42
Identities = 549/830 (66%), Gaps = 24/830 (3%)
Strand=Plus/Plus
Query 8408 CCGGCGCGGTGGCTGCAATGGCGGATGAGCCGTTTGATTATATCGGCCTGCCGTTCAACG 8467
||| |||| |||| || ||| ||||| |||||||| | ||| | | ||| | | ||
Sbjct 22781 CCGCCGCGCTGGCGGCGTTGGGTGATGAACCGTTTGAATTCATCTGTCAGCCCTGGAGCG 22840
Query 8468 ACACGGCCTCCGTTAACACGCTGGTGACCGA-GATGAACGATACCAGCGGTCGCTGGAGC 8526
| |||||| | | || | |||| | ||| |||| ||||||| ||| |||||| |
Sbjct 22841 ATACGGCCACGCTCGACGC-CTGGAAAGCGACGATGGACGATACGGCCGGGCGCTGGTCC 22899
Query 8527 TATGCGCGTCAGCTGTATGGTCATGTGTACACGGCAAAGATCGGCA-CGCTGTCAGAACT 8585
| || ||||| ||||| ||||| |||| || ||| ||| | || | | || ||
Sbjct 22900 TGGGCCAAGCAGCTCTATGGCCATGTTTACAGCGCCAAGCGCGGTAGCGTCGGC-GAGCT 22958
Query 8586 GGTGACCGCAGGT--GACCAGTTTAACCAGCAGCACATTACCCTGGCGGGATACGAAAAA 8643
|||| |||| || | || | ||| | |||||||| || || || | ||||
Sbjct 22959 GGTGGCCGCCGGCCGGGCCCGC--AACGACCAGCACATGACTTTGCACGGCTTCGAACGC 23016
Query 8644 GAGA---CCCAGACGCCTGCCGACGAGCTGGCGGCAAGCCGTACCGCCCGCGCA--GCGG 8698
| | ||||| || || | || |||| || || |||| |||| | ||||
Sbjct 23017 GGGTTGCCCCAGCCGG-TGTGG--GAAGTGGCCGC--GCAGTACGCGGCGCGAACGGCGG 23071
Query 8699 TGTTTATTCGCAACGATCCGGCACGTCCCACGCAGACCGGTGAGCTGGTGGGTATGCTGC 8758
|||| || | ||| || | || || ||||||||||| ||| ||| || |
Sbjct 23072 TGTTCATCAGTGCCGACCCCGGCCGGCCAACGCAGACCGGCACCCTGTCGGGCATTGATC 23131
Query 8759 CTGCGCCGAAGGGGAAACGGTTCACGATGACCGAACAACAGACCCTGCTGTCTCATGGCG 8818
| || ||| | | || || || ||||||| | || | |||||| | |||
Sbjct 23132 CGGCCCCGGCCAGCGACCGCTTTACACTGACCGAGCGTCAATCGCTGCTGAGCTACGGCA 23191
Query 8819 TGGCAACGGCGTATGTCGAAAGCGGGGTGCTGCGCATTCAGCGTGATGTCACCACGTACA 8878
| || || ||||| ||| |||| | ||||||||||| | || || ||||||
Sbjct 23192 TTGCTACCGCGTACTACGAGGGCGGTTCGTACCGCATTCAGCGCGCCGTGACGACGTACC 23251
Query 8879 GGAAAAACGCTTACGGTGTTGCGGATAACAGCTACCTCGACAGCGAGACGCTGCATACCA 8938
| ||||| ||||| || |||| ||| || ||||||||| |||||| ||||
Sbjct 23252 AGCGCAACGCATACGGCCAGGCCGATACGTCCTATCTGGACAGCGAGCCGCTGC--ACCA 23309
Query 8939 G--CGCGTATGTACTGCGCAAACTG-AAATCCGTCATTACCAGTAAGTACGGGCGTCACA 8995
| ||| | || | ||||| ||| || |||| |||||||| || ||||| |||||||
Sbjct 23310 GTCGGCGCACGTGATTCGCAACCTGCAAGGCCGT-ATTACCAGCAAATACGGCCGTCACA 23368
Query 8996 AGCTTGCCAGCGACGGTACCCGCTTTGGTCCCGGTCAGGCGATTGTCACCCCGGCGGTGA 9055
|||| |||| ||| || ||| ||| || |||||||| || || || ||| |||||
Sbjct 23369 AGCTGGCCAACGATGGCACCGCCTTCGGCGATGGTCAGGCCATCGTGACGCCGTTGGTGA 23428
Query 9056 TCAAAGGGGAACTGCTGGCAACCTACCGTCAGCTTGAGCGTGCGGGGATCGTGGAAAACT 9115
|| || || ||| |||| ||||| | |||| ||||| || || | || || |||
Sbjct 23429 TCCGTGGCGAGCTGGTGGCGGCCTACGGCGAGCTGGAGCGCGCCGGCCTGGTCGAGAACA 23488
Query 9116 ACGAACTTTTTAAGCAGTACCTGGTTGTGGAGCGTGATGCCAGCGATCCGAACCGCCTGA 9175
|| || || ||||| ||||| | || ||||| || || | || |||||||| |
Sbjct 23489 TGGAGCTGTTCAAGCAACACCTGATCGTTGAGCGCGACGCGAAAGACCCGAACCGAATCG 23548
Query 9176 ACACGCTGTTCCCGCCTGACTATGTTAACCAGTTGCGTGTCTTTGCCGTG 9225
|||||||||||| || || |||||| |||| ||| | ||| ||
Sbjct 23549 CGGTGCTGTTCCCGCCGGATCTGGTCAACCAGCTGCGCGTCCTGGCCCTG 23598
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 122714697890108
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |