Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq616 116 3e-21
seq5007 107 2e-18
seq871 98.7 8e-16
seq611 98.7 8e-16
seq4364 95.1 1e-14
seq311 95.1 1e-14
>seq616
Length=1528
Score = 116 bits (128), Expect = 3e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078
|||||||||| | ||| | || | || | || || || || || ||||||||||||
Sbjct 871 TGCCTCCGCGAAGCCGAAGGACGAGGTGGAGGGTCGATTCCTTCTGGATATTGTAGTCGG 930
Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138
| | |||| | ||||| ||||| || |||||| | || | ||||| || || || |
Sbjct 931 AGAGGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGG 990
Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198
| | || |||||||| ||||||| |||| | | || | ||||| | | |||| |
Sbjct 991 GAATTCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCAATCGTGTCGGAGCCTTCCA 1050
Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|||| ||||| || | ||||| |||| || ||||||||||| |||||
Sbjct 1051 CTTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1099
>seq5007
Length=89527
Score = 107 bits (118), Expect = 2e-18
Identities = 164/234 (70%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078
|||||||||||| || | || | ||| | || || ||||| || || |||||||||
Sbjct 22258 TGCCTCCGCGCAGACGAAGGACGAGATGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGG 22317
Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138
| |||| |||| ||||| || || |||||| | ||||| ||||| || || || |
Sbjct 22318 AGAGCGTGCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAG 22377
Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198
| | || || || || ||||||| |||| | | || | || || | | |||| |
Sbjct 22378 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAGCCTTCGA 22437
Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTG 27252
| || || || || | || || || || |||||||||||||| ||||| ||||
Sbjct 22438 CCTCGAGCGTGATCGTCTTCCCTGTGAGGGTTTTCACAAAGATCTGCATGGCTG 22491
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 27017 ATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC 27076
||| || || |||| || | || | ||| | || || ||||| ||||| ||||||||
Sbjct 22028 ATTTCCCCCACGCAGACGAAGGACGAGATGGAGGGTCGACTCTTTCTGAATGTTGTAGTC 22087
Query 27077 GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGG 27136
| | |||| |||| ||||| || || |||||| | ||||| ||||| || || ||
Sbjct 22088 GGAGAGCGTGCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGG 22147
Query 27137 CGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTC 27196
|| | || || || || ||||||| |||| | | || | || || | | | ||
Sbjct 22148 AGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAGCCCTC 22207
Query 27197 AACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
||| || || || || | || || || || |||||||||||||| |||||
Sbjct 22208 AACCTCGAGCGTGATCGTCTTCCCTGTGAGGGTTTTCACAAAGATCTGCAT 22258
>seq871
Length=2590
Score = 98.7 bits (108), Expect = 8e-16
Identities = 146/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103
||| || || || || ||||| || ||||||||| | | | | || |||||||||||||
Sbjct 702 ATGCAAAGTCGATTCCTTTTGGATGTTGTAGTCGTTGAGGGTTCGGCCGTCTTCGAGCTG 643
Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163
|| |||||| | || | |||||| ||||| || || | ||| ||||| || ||||||
Sbjct 642 CTTTCCGGCGAAGATCAAACGCTGCTGATCAGGGGGAATACCTTCTTTGTCCTGGATCTT 583
Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223
|| | | | || | |||| | |||| ||||| || || || | || || ||
Sbjct 582 CGCCTTTACGTTCTCGATGCTGTCAGAACCTTCCACTTCCAGGGTGATCGTCTTCCCGGT 523
Query 27224 CAGAGTTTTCACAAAGATTTGCATAGC 27250
|| || ||||| ||||| ||||| ||
Sbjct 522 GAGGGTCTTCACGAAGATCTGCATTGC 496
>seq611
Length=17302
Score = 98.7 bits (108), Expect = 8e-16
Identities = 161/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078
|||||||||| | || | || | ||| | || || || || || || ||||||||
Sbjct 9635 TGCCTCCGCGAAGACGAAGGACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCG 9694
Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138
| | |||| | || |||||||| || |||||| | ||||| ||||| ||||| || |
Sbjct 9695 AGAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCTGGGG 9754
Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198
| | || || || || ||||||| |||| | || | ||||| | || || |
Sbjct 9755 GAATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGCCTCGA 9814
Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGC 27250
| || || || || | ||||| || || |||||||| ||||||||||| ||
Sbjct 9815 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACGAAGATTTGCATTGC 9866
>seq4364
Length=177085
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| ||||| | || | ||| | ||| | || || || || || || ||||| |||
Sbjct 156920 CCACCGCGAAGTCGGAGTACGAGATGGAGGGTCGATTCCTTCTGGATGTTGTAATCGGAG 156979
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| |||| ||||||||||||| || |||||| | || | |||||| ||||| || ||
Sbjct 156980 AGAGTGCGACCGTCTTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 157039
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| || ||||| || ||||||| |||| | | || | ||||| | | || |||
Sbjct 157040 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCCGAACCCTCGACT 157099
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || || || | ||||| || || || ||||| ||||| |||||
Sbjct 157100 TCCAGGGTGATCGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 157146
>seq311
Length=48857
Score = 95.1 bits (104), Expect = 1e-14
Identities = 132/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 27066 ATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGC 27125
|| ||||||||| | | | | || ||||||||||||| || |||||| | || | |||
Sbjct 16787 ATGTTGTAGTCGTTGAGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAAGCGC 16728
Query 27126 TGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTG 27185
|| ||||| || || | ||||| ||||| ||||||| |||| | | || | ||
Sbjct 16727 TGCTGATCTGGAGGAATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGCTG 16668
Query 27186 TCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGC 27245
|| | ||||| ||||| || || || | || || || || || ||||| ||||| |||
Sbjct 16667 TCAGAAGCTTCGACTTCGAGGGTAATGGTCTTCCCGGTGAGGGTCTTCACGAAGATCTGC 16608
Query 27246 ATAGC 27250
|| ||
Sbjct 16607 ATTGC 16603
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424904186367408
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |