Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq5716 122 1e-22
seq5329 84.2 3e-11
>seq5716
Length=132174
Score = 122 bits (134), Expect = 1e-22
Identities = 458/714 (64%), Gaps = 27/714 (4%)
Strand=Plus/Minus
Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766
||| ||||| | ||||| || || | | ||||||| || || | |||||| ||||| ||
Sbjct 122654 GTAAATGTTGGACGTGTACGGCTCGATGGATTCATTGTTTCCAAGGATTTGAGCGGTTGA 122595
Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826
|| || ||||| || || | | |||||||| || | || | || | ||| ||
Sbjct 122594 TGCGGTCGGCATCGGGGCAAGAAGCAGACTGTTGCGTACCCCGTGCTTCGCGATTTTCTC 122535
Query 110827 CTTGAGAACATCCCAGTC----------GTAGTTGAGCTTGGTTTCAC--CTTC------ 110868
|||||| ||||||| |||| | |||||| | ||||
Sbjct 122534 TTTGAGAGATGCCCAGTCACACTGATCTGTAGGGACGACTGGTTTGCCGTCTTCTGTTTG 122475
Query 110869 CCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGA 110928
|||||| ||| |||| || | |||||| | | ||||| |||||| ||||||| || |
Sbjct 122474 CCACATTTCATACTGCAGAATTCCTTGGCTCACTGGAGACCCCTCATAGGTTTCGTAAGG 122415
Query 110929 ACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAA 110988
||| | ||||| | ||| || ||| ||||| | ||||| || || ||||||||
Sbjct 122414 ACCATATTTCTCAGCAAGTTCGCATGACGCTTCCAGAGCTGCGTAGTAAATTGTTTCAAA 122355
Query 110989 GATACGAGCATTCATCTCCTTGGCTTCAT--CTGAATCAAATGCGTAGCGGCACAAAATA 111046
||| || |||| || || | | ||| || | || ||| | ||
Sbjct 122354 GATTCGCTTGTTCACATCTCGAGCCTGAGGGCTGGTG--AACGGGTGGCGCATTAGCATG 122297
Query 111047 AATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTT 111106
|| |||| || | ||| ||||| || | || || || | || ||| | ||||| ||
Sbjct 122296 AAGGCATCAGCCAAACCCTGAACTCCGATTCCTATTGGGCGATGACGCTTGTTAGAGGTT 122237
Query 111107 CGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACA 111166
|| | | ||||| | || | |||||| | | ||| | ||| || |
Sbjct 122236 TCAGCTTCCGGTATAGGATAGTAGTTGCAGTCAATTATTTTGTTCAAATTGCGTGTGATG 122177
Query 111167 ATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATA- 111225
| ||| || || || ||||| |||||||| || || || | || || || ||| |
Sbjct 122176 ACCTTGGTAATCTCGTGAAGCTTTTCATAGTCGAAGGTCT---TGTCATCCTTCACAAAT 122120
Query 111226 CTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTC 111285
|| | || | ||| || |||| |||||||||||| ||||| | |||||
Sbjct 122119 CTGTTCAAAG-CGACGGAGGCCAGATTGCAAACAGCGACTTCATCTGGGGACGAGTACTG 122061
Query 111286 TAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT 111345
| ||||| || || | || || | ||| ||||| ||||||||||| |||||| |||
Sbjct 122060 CACTATTTCGGTGCACAGATTTGAGCACTTGATCGTTCCCAAATTCTTCTGGTTAGACTT 122001
Query 111346 CTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 111399
||||| ||||| ||||| |||||||| || || || || || |||| ||
Sbjct 122000 TCGATTGCATGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTTTCGATCTGCGA 121947
>seq5329
Length=523892
Score = 84.2 bits (92), Expect = 3e-11
Identities = 116/160 (73%), Gaps = 2/160 (1%)
Strand=Plus/Plus
Query 182696 TTTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACCCGCAAC 182755
|||||| || | |||||||||||||| | || || || || ||| ||| |||| |||
Sbjct 503736 TTTACCACGCATAGGGAACACACCGTAACGGTCGCGTCCCACAACACCGAGTCCCGAAAC 503795
Query 182756 CGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACACTTTCCAG-ATTGTG 182814
||| || ||||| || ||||| ||||| || | ||| || || ||| || |||| |
Sbjct 503796 CGCAAGTGTTTTGGCTGAATCTCCCTCAGTCAGAATCAGGGTGCACAAATGAGAATTGCG 503855
Query 182815 CCGTACCCGCCTTGTTCGCGTCATCCAACTTGGGAATACC 182854
||| || || | ||| ||||| |||| || ||||| ||
Sbjct 503856 -CGTTCCGGCGTCGTTGGCGTCGTCCAGTTTCGGAATTCC 503894
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627986200766400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |