Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5716 122 1e-22 seq5329 84.2 3e-11 >seq5716 Length=132174 Score = 122 bits (134), Expect = 1e-22 Identities = 458/714 (64%), Gaps = 27/714 (4%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| ||||| | ||||| || || | | ||||||| || || | |||||| ||||| || Sbjct 122654 GTAAATGTTGGACGTGTACGGCTCGATGGATTCATTGTTTCCAAGGATTTGAGCGGTTGA 122595 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || ||||| || || | | |||||||| || | || | || | ||| || Sbjct 122594 TGCGGTCGGCATCGGGGCAAGAAGCAGACTGTTGCGTACCCCGTGCTTCGCGATTTTCTC 122535 Query 110827 CTTGAGAACATCCCAGTC----------GTAGTTGAGCTTGGTTTCAC--CTTC------ 110868 |||||| ||||||| |||| | |||||| | |||| Sbjct 122534 TTTGAGAGATGCCCAGTCACACTGATCTGTAGGGACGACTGGTTTGCCGTCTTCTGTTTG 122475 Query 110869 CCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGA 110928 |||||| ||| |||| || | |||||| | | ||||| |||||| ||||||| || | Sbjct 122474 CCACATTTCATACTGCAGAATTCCTTGGCTCACTGGAGACCCCTCATAGGTTTCGTAAGG 122415 Query 110929 ACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAA 110988 ||| | ||||| | ||| || ||| ||||| | ||||| || || |||||||| Sbjct 122414 ACCATATTTCTCAGCAAGTTCGCATGACGCTTCCAGAGCTGCGTAGTAAATTGTTTCAAA 122355 Query 110989 GATACGAGCATTCATCTCCTTGGCTTCAT--CTGAATCAAATGCGTAGCGGCACAAAATA 111046 ||| || |||| || || | | ||| || | || ||| | || Sbjct 122354 GATTCGCTTGTTCACATCTCGAGCCTGAGGGCTGGTG--AACGGGTGGCGCATTAGCATG 122297 Query 111047 AATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTT 111106 || |||| || | ||| ||||| || | || || || | || ||| | ||||| || Sbjct 122296 AAGGCATCAGCCAAACCCTGAACTCCGATTCCTATTGGGCGATGACGCTTGTTAGAGGTT 122237 Query 111107 CGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACA 111166 || | | ||||| | || | |||||| | | ||| | ||| || | Sbjct 122236 TCAGCTTCCGGTATAGGATAGTAGTTGCAGTCAATTATTTTGTTCAAATTGCGTGTGATG 122177 Query 111167 ATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATA- 111225 | ||| || || || ||||| |||||||| || || || | || || || ||| | Sbjct 122176 ACCTTGGTAATCTCGTGAAGCTTTTCATAGTCGAAGGTCT---TGTCATCCTTCACAAAT 122120 Query 111226 CTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTC 111285 || | || | ||| || |||| |||||||||||| ||||| | ||||| Sbjct 122119 CTGTTCAAAG-CGACGGAGGCCAGATTGCAAACAGCGACTTCATCTGGGGACGAGTACTG 122061 Query 111286 TAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT 111345 | ||||| || || | || || | ||| ||||| ||||||||||| |||||| ||| Sbjct 122060 CACTATTTCGGTGCACAGATTTGAGCACTTGATCGTTCCCAAATTCTTCTGGTTAGACTT 122001 Query 111346 CTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 111399 ||||| ||||| ||||| |||||||| || || || || || |||| || Sbjct 122000 TCGATTGCATGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTTTCGATCTGCGA 121947 >seq5329 Length=523892 Score = 84.2 bits (92), Expect = 3e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 182696 TTTACCGCGAAGTGGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACCCGCAAC 182755 |||||| || | |||||||||||||| | || || || || ||| ||| |||| ||| Sbjct 503736 TTTACCACGCATAGGGAACACACCGTAACGGTCGCGTCCCACAACACCGAGTCCCGAAAC 503795 Query 182756 CGCGAGGGTTTTCGCCGAATCACCCTCCGTGACAATGAGAGTACACTTTCCAG-ATTGTG 182814 ||| || ||||| || ||||| ||||| || | ||| || || ||| || |||| | Sbjct 503796 CGCAAGTGTTTTGGCTGAATCTCCCTCAGTCAGAATCAGGGTGCACAAATGAGAATTGCG 503855 Query 182815 CCGTACCCGCCTTGTTCGCGTCATCCAACTTGGGAATACC 182854 ||| || || | ||| ||||| |||| || ||||| || Sbjct 503856 -CGTTCCGGCGTCGTTGGCGTCGTCCAGTTTCGGAATTCC 503894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627986200766400