Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5071 116 4e-21 >seq5071 Length=368534 Score = 116 bits (128), Expect = 4e-21 Identities = 312/463 (67%), Gaps = 17/463 (4%) Strand=Plus/Minus Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 ||||| ||| ||||||| | || |||| |||||||| || ||||| || || Sbjct 135558 GACGAACAGTTTTTCATCTCGCATGTATTGGCATTCTTCGCAGCATCAGATGGCATCGTC 135499 Query 59739 ATGGAAAATATAGACAT-GAACTTTTC---CAAGGATGTCCAGATTGCCGAGGCCCGGTC 59794 | |||||| | ||| || | |||| |||| | ||| |||| | ||||||| || Sbjct 135498 AATGAAAATCT---CATCGATCGTTTCACTCAAG-AGGTCAAGATGCCGGAGGCCCTTTC 135443 Query 59795 GTTCTAC-GCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGA 59853 ||||||| || | | ||| | |||| || ||||| || | ||||||| |||| Sbjct 135442 GTTCTACAGCTTCCAAATCGC-CGTCGAGGGGATTCACTCTGAAATGTACTCGAAGATGA 135384 Query 59854 TCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGA-GACG 59912 | || | || | ||||| |||||| || ||| ||||| | || Sbjct 135383 TTGAGGCCTACGTGACCGATCCTCGTGAGAAGAACAAGCTCTTCAACGCCATCCAAGAAT 135324 Query 59913 TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTC-CTGGA--GCA 59969 |||| ||| | ||| | ||||| || ||||| | | ||||| || | || || Sbjct 135323 TCCCATGCA-TCAAAAAGAAAGCTGACTGGGCGCTTCGTTGGATCGGTGACAAGAACGCG 135265 Query 59970 TCATTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTC 60028 || || | | |||| | || || || || ||| ||||| || || |||||||| || || Sbjct 135264 TCGTTCGGAACACGTGTGATCGCCTTCGC-TGCTGTGGAGGGCATTTTCTTCTCAGGATC 135206 Query 60029 GTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAA 60088 |||| ||| || |||||| | ||||||||||| |||||||| ||||| | | ||| Sbjct 135205 GTTCGCTGCCATATTCTGGTTGAAAAAGCGTGGTCTCATGCCTGGCCTCACCCACAGCAA 135146 Query 60089 CGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCA 60131 ||| || ||||||||||| || ||||| |||| || || ||| Sbjct 135145 CGAACTCATTTCCCGGGATGAAGGCCTACATCGCGACTTCGCA 135103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548484798828960