Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq5071 116 4e-21
>seq5071
Length=368534
Score = 116 bits (128), Expect = 4e-21
Identities = 312/463 (67%), Gaps = 17/463 (4%)
Strand=Plus/Minus
Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738
||||| ||| ||||||| | || |||| |||||||| || ||||| || ||
Sbjct 135558 GACGAACAGTTTTTCATCTCGCATGTATTGGCATTCTTCGCAGCATCAGATGGCATCGTC 135499
Query 59739 ATGGAAAATATAGACAT-GAACTTTTC---CAAGGATGTCCAGATTGCCGAGGCCCGGTC 59794
| |||||| | ||| || | |||| |||| | ||| |||| | ||||||| ||
Sbjct 135498 AATGAAAATCT---CATCGATCGTTTCACTCAAG-AGGTCAAGATGCCGGAGGCCCTTTC 135443
Query 59795 GTTCTAC-GCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGA 59853
||||||| || | | ||| | |||| || ||||| || | ||||||| ||||
Sbjct 135442 GTTCTACAGCTTCCAAATCGC-CGTCGAGGGGATTCACTCTGAAATGTACTCGAAGATGA 135384
Query 59854 TCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGA-GACG 59912
| || | || | ||||| |||||| || ||| ||||| | ||
Sbjct 135383 TTGAGGCCTACGTGACCGATCCTCGTGAGAAGAACAAGCTCTTCAACGCCATCCAAGAAT 135324
Query 59913 TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTC-CTGGA--GCA 59969
|||| ||| | ||| | ||||| || ||||| | | ||||| || | || ||
Sbjct 135323 TCCCATGCA-TCAAAAAGAAAGCTGACTGGGCGCTTCGTTGGATCGGTGACAAGAACGCG 135265
Query 59970 TCATTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTC 60028
|| || | | |||| | || || || || ||| ||||| || || |||||||| || ||
Sbjct 135264 TCGTTCGGAACACGTGTGATCGCCTTCGC-TGCTGTGGAGGGCATTTTCTTCTCAGGATC 135206
Query 60029 GTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAA 60088
|||| ||| || |||||| | ||||||||||| |||||||| ||||| | | |||
Sbjct 135205 GTTCGCTGCCATATTCTGGTTGAAAAAGCGTGGTCTCATGCCTGGCCTCACCCACAGCAA 135146
Query 60089 CGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCA 60131
||| || ||||||||||| || ||||| |||| || || |||
Sbjct 135145 CGAACTCATTTCCCGGGATGAAGGCCTACATCGCGACTTCGCA 135103
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548484798828960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |