Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq109 95.1 1e-14
seq5071 87.8 2e-12
>seq109
Length=161459
Score = 95.1 bits (104), Expect = 1e-14
Identities = 295/450 (66%), Gaps = 14/450 (3%)
Strand=Plus/Minus
Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933
|||| || ||||||||||| || ||||| |||||| | ||| | | ||| |||
Sbjct 136176 ATCCAGTGCCGATGCCCTCGGCGCCGTTCGCCAGAACAAGCGGAATGACAGGACAGTACC 136117
Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993
|||| |||||||| ||| |||| || ||| | |||| | ||| |||| |||
Sbjct 136116 ACTCGGGCTCCACGGTTTGCTCGTCTTCGGTCAGATTCTTCAGCA---AATCGTCATCCG 136060
Query 151994 GATCG---AATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGG 152050
|| || | | |||| || || |||| ||| ||||||| || | ||| |
Sbjct 136059 CTGCGGGAAAGAGAAGCCGAGCCAACGGGCTCACTTTTGTGTAGATGTAGCGCGCGCTCG 136000
Query 152051 CCGCATC-CTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTG 152109
||| ||| ||| | |||| | ||||| |||||||| || || | ||||| ||
Sbjct 135999 CCGAATCGCTTCCTCCCTG-ATGTCGCGTGCCAAACTGCCCGATCGGTTGAAGGAGATTC 135941
Query 152110 AGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCG---TGCCCTGCAGACTC 152166
|||||||||| ||| ||| | ||||| ||||| | |||| || | || || |
Sbjct 135940 AGGTTGTTGGAGCCAACGTAGTTCTGTGCCAAGCGGATGATCGTGTTGACAAGC-GATT- 135883
Query 152167 GCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTC 152226
| || ||||| ||||| || | | |||| | ||| ||||| || ||| ||
Sbjct 135882 -CCTCGCCGTGATGATAGGCGGAGATGTGGGCGACGGCTCCAGCCAATTGATTCACTTTG 135824
Query 152227 ATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTC 152286
|| |||| || | | |||| || ||| | | |||||| ||||| |||||||
Sbjct 135823 ATTTCCGCGTTCTCCGCCCTTTTGAAGCAAGCGAAGAGCACCTTCCGCTGACTTGGTTTC 135764
Query 152287 AAACCGTCCACCACGTGAGGAATCGAACGC 152316
|| ||||| || || |||||||| |||
Sbjct 135763 AATCCGTCAACTACACTTGGAATCGATCGC 135734
>seq5071
Length=368534
Score = 87.8 bits (96), Expect = 2e-12
Identities = 255/382 (67%), Gaps = 13/382 (3%)
Strand=Plus/Plus
Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864
||||||||||| || |||||||| |||||||| || |||||| ||| || || ||||
Sbjct 135158 AGGCCAGGCATGAGACCACGCTTTTTCAACCAGAATATGGCAGCGAACGATCCTGAGAAG 135217
Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGC---ATCGGAA 74921
|| ||||| || ||| || ||||||| | ||| |||||| || | | |
Sbjct 135218 AAAATGCCCTCCACAGCAGCGAAGGCGATCACACGTGTTCCGAACGACGCGTTCTTGTCA 135277
Query 74922 GTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGC 74980
|||||| | ||||| |||||||| ||||| ||| |||| | ||| ||
Sbjct 135278 CCGATCCAACGAAGCGCCCAGTCAGCTTTCTTTTTGA-TGCATGGGAATTCTTGGATGGC 135336
Query 74981 TTGGAAGAGGCTTG-CCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGT 75039
| ||||| ||||| |||||| ||||| | ||| |||||||| ||||
Sbjct 135337 GTTGAAGA-GCTTGTTCTTCTCACGAGGATCGGTCACGTAGGCCTCAATCATCTTCGAGT 135395
Query 75040 ACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGC-GTAGAAAGACCGCGCCTCT 75098
|| | || || |||||| |||| | ||| | | | || |||||| || | |||||
Sbjct 135396 ACATTTCAGAGTGAATCCCCTCGACG-GCGATTTGGAAGCTGTAGAACGAAAGGGCCTCC 135454
Query 75099 GCAATCTGTACATCCT--TTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCG 75156
| |||| || || | ||||| || | || ||| || |||||||||| || |
Sbjct 135455 GGCATCTTGACCTCTTGAGTGAAACGATC--GATGAGATTTTCATTGACGATGCCATCTG 135512
Query 75157 AGGCGGCGAAAAAAGCCAGTAC 75178
| || ||||| || |||| |||
Sbjct 135513 ATGCTGCGAAGAATGCCAATAC 135534
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547176094273200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |