Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq109 95.1 1e-14 seq5071 87.8 2e-12 >seq109 Length=161459 Score = 95.1 bits (104), Expect = 1e-14 Identities = 295/450 (66%), Gaps = 14/450 (3%) Strand=Plus/Minus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 |||| || ||||||||||| || ||||| |||||| | ||| | | ||| ||| Sbjct 136176 ATCCAGTGCCGATGCCCTCGGCGCCGTTCGCCAGAACAAGCGGAATGACAGGACAGTACC 136117 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 |||| |||||||| ||| |||| || ||| | |||| | ||| |||| ||| Sbjct 136116 ACTCGGGCTCCACGGTTTGCTCGTCTTCGGTCAGATTCTTCAGCA---AATCGTCATCCG 136060 Query 151994 GATCG---AATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGG 152050 || || | | |||| || || |||| ||| ||||||| || | ||| | Sbjct 136059 CTGCGGGAAAGAGAAGCCGAGCCAACGGGCTCACTTTTGTGTAGATGTAGCGCGCGCTCG 136000 Query 152051 CCGCATC-CTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTG 152109 ||| ||| ||| | |||| | ||||| |||||||| || || | ||||| || Sbjct 135999 CCGAATCGCTTCCTCCCTG-ATGTCGCGTGCCAAACTGCCCGATCGGTTGAAGGAGATTC 135941 Query 152110 AGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCG---TGCCCTGCAGACTC 152166 |||||||||| ||| ||| | ||||| ||||| | |||| || | || || | Sbjct 135940 AGGTTGTTGGAGCCAACGTAGTTCTGTGCCAAGCGGATGATCGTGTTGACAAGC-GATT- 135883 Query 152167 GCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTC 152226 | || ||||| ||||| || | | |||| | ||| ||||| || ||| || Sbjct 135882 -CCTCGCCGTGATGATAGGCGGAGATGTGGGCGACGGCTCCAGCCAATTGATTCACTTTG 135824 Query 152227 ATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTC 152286 || |||| || | | |||| || ||| | | |||||| ||||| ||||||| Sbjct 135823 ATTTCCGCGTTCTCCGCCCTTTTGAAGCAAGCGAAGAGCACCTTCCGCTGACTTGGTTTC 135764 Query 152287 AAACCGTCCACCACGTGAGGAATCGAACGC 152316 || ||||| || || |||||||| ||| Sbjct 135763 AATCCGTCAACTACACTTGGAATCGATCGC 135734 >seq5071 Length=368534 Score = 87.8 bits (96), Expect = 2e-12 Identities = 255/382 (67%), Gaps = 13/382 (3%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||||||||| || |||||||| |||||||| || |||||| ||| || || |||| Sbjct 135158 AGGCCAGGCATGAGACCACGCTTTTTCAACCAGAATATGGCAGCGAACGATCCTGAGAAG 135217 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGC---ATCGGAA 74921 || ||||| || ||| || ||||||| | ||| |||||| || | | | Sbjct 135218 AAAATGCCCTCCACAGCAGCGAAGGCGATCACACGTGTTCCGAACGACGCGTTCTTGTCA 135277 Query 74922 GTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGC 74980 |||||| | ||||| |||||||| ||||| ||| |||| | ||| || Sbjct 135278 CCGATCCAACGAAGCGCCCAGTCAGCTTTCTTTTTGA-TGCATGGGAATTCTTGGATGGC 135336 Query 74981 TTGGAAGAGGCTTG-CCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGT 75039 | ||||| ||||| |||||| ||||| | ||| |||||||| |||| Sbjct 135337 GTTGAAGA-GCTTGTTCTTCTCACGAGGATCGGTCACGTAGGCCTCAATCATCTTCGAGT 135395 Query 75040 ACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGC-GTAGAAAGACCGCGCCTCT 75098 || | || || |||||| |||| | ||| | | | || |||||| || | ||||| Sbjct 135396 ACATTTCAGAGTGAATCCCCTCGACG-GCGATTTGGAAGCTGTAGAACGAAAGGGCCTCC 135454 Query 75099 GCAATCTGTACATCCT--TTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCG 75156 | |||| || || | ||||| || | || ||| || |||||||||| || | Sbjct 135455 GGCATCTTGACCTCTTGAGTGAAACGATC--GATGAGATTTTCATTGACGATGCCATCTG 135512 Query 75157 AGGCGGCGAAAAAAGCCAGTAC 75178 | || ||||| || |||| ||| Sbjct 135513 ATGCTGCGAAGAATGCCAATAC 135534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547176094273200