Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq5007 93.3 3e-14
seq611 93.3 3e-14
>seq5007
Length=89527
Score = 93.3 bits (102), Expect = 3e-14
Identities = 154/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | || | |||||| || ||| || |||||||| || || || || || ||
Sbjct 22041 AGACGAAGGACGAGATGGAGGGTCGACTCTTTCTGAATGTTGTAGTCGGAGAGCGTGCGT 22100
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || ||||| || ||||| || || | ||||| ||||| || || | || |||
Sbjct 22101 CCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATGCCTTCC 22160
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| |||||| | || ||| | || || || || ||| || || | ||
Sbjct 22161 TTGTCTTGGATCTTG-GCCTTCACGTTCTCGATGGTATCGGAGCCCTCAACCTCGAGCGT 22219
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
||||| || || || | ||||||||||| |||||||||
Sbjct 22220 GATCGTCTTCCCTGTGAGGGTTTTCACAAAGATCTGCATG 22259
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/229 (69%), Gaps = 3/229 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | || | |||||| || ||| || || ||||| || || || || || ||
Sbjct 22269 AGACGAAGGACGAGATGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGCGTGCGT 22328
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || ||||| || ||||| || || | ||||| ||||| || || | || |||
Sbjct 22329 CCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATGCCTTCC 22388
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| |||||| | || ||| | || || || || || || || | ||
Sbjct 22389 TTGTCTTGGATCTTG-GCCTTCACGTTCTCGATGGTATCGGAGCCTTCGACCTCGAGCGT 22447
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT-GTTGATTGT 34715
||||| || || || | ||||||||||| |||||||| | |||||||
Sbjct 22448 GATCGTCTTCCCTGTGAGGGTTTTCACAAAGATCTGCATGGCTGATTGT 22496
>seq611
Length=17302
Score = 93.3 bits (102), Expect = 3e-14
Identities = 162/231 (70%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||| | || | ||||| || ||||| || ||||| || || ||
Sbjct 4392 CCACCGCGAAGACGAAGGACGAGGTGGAGCGTTGATTCCTTCTGGATGTTGTAGTCCGAC 4451
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | || || || || || ||||| || || | ||||||||||| || ||
Sbjct 4452 AGGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCTGGGGGA 4511
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTC--TCC 34656
| ||| ||||||||| |||| || | || ||| | || ||||| || || ||
Sbjct 4512 ATTCCTTCCTTGTCTTGGATC-TTGGCCTTCACGTTCTCGATAGTGTC--CGATCCTTCG 4568
Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
||||||| ||| || || || || || | ||| ||||| ||||||||||||
Sbjct 4569 ACTTCCAGGGTAATGGTCTTGCCAGTGAGCGTCTTCACGAAAATCTGCATG 4619
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314707222135322
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |