Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq5007 93.3 3e-14 seq611 93.3 3e-14 >seq5007 Length=89527 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | |||||| || ||| || |||||||| || || || || || || Sbjct 22041 AGACGAAGGACGAGATGGAGGGTCGACTCTTTCTGAATGTTGTAGTCGGAGAGCGTGCGT 22100 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || ||||| || ||||| || || | ||||| ||||| || || | || ||| Sbjct 22101 CCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATGCCTTCC 22160 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||||| | || ||| | || || || || ||| || || | || Sbjct 22161 TTGTCTTGGATCTTG-GCCTTCACGTTCTCGATGGTATCGGAGCCCTCAACCTCGAGCGT 22219 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| || || || | ||||||||||| ||||||||| Sbjct 22220 GATCGTCTTCCCTGTGAGGGTTTTCACAAAGATCTGCATG 22259 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | |||||| || ||| || || ||||| || || || || || || Sbjct 22269 AGACGAAGGACGAGATGGAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAGAGCGTGCGT 22328 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || ||||| || ||||| || || | ||||| ||||| || || | || ||| Sbjct 22329 CCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATGCCTTCC 22388 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||||| | || ||| | || || || || || || || | || Sbjct 22389 TTGTCTTGGATCTTG-GCCTTCACGTTCTCGATGGTATCGGAGCCTTCGACCTCGAGCGT 22447 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT-GTTGATTGT 34715 ||||| || || || | ||||||||||| |||||||| | ||||||| Sbjct 22448 GATCGTCTTCCCTGTGAGGGTTTTCACAAAGATCTGCATGGCTGATTGT 22496 >seq611 Length=17302 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | ||||| || ||||| || ||||| || || || Sbjct 4392 CCACCGCGAAGACGAAGGACGAGGTGGAGCGTTGATTCCTTCTGGATGTTGTAGTCCGAC 4451 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || || ||||| || || | ||||||||||| || || Sbjct 4452 AGGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGGTCTGGGGGA 4511 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTC--TCC 34656 | ||| ||||||||| |||| || | || ||| | || ||||| || || || Sbjct 4512 ATTCCTTCCTTGTCTTGGATC-TTGGCCTTCACGTTCTCGATAGTGTC--CGATCCTTCG 4568 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||||| ||| || || || || || | ||| ||||| |||||||||||| Sbjct 4569 ACTTCCAGGGTAATGGTCTTGCCAGTGAGCGTCTTCACGAAAATCTGCATG 4619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314707222135322