Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq4364 131 1e-25 seq616 123 2e-23 seq871 120 3e-22 seq5007 118 9e-22 seq611 111 1e-19 >seq4364 Length=177085 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || || || ||||| || || Sbjct 157146 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACGATCACCCTGGAAGTCGAGGGTTCG 157087 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || ||||||||||||||||| || || ||||| Sbjct 157086 GACACCATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCAGATCAG 157027 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | |||||| || || | |||||| || || | |||||||||||| Sbjct 157026 CAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAAGACGGTCGCACTCTCTCCGATTACAAC 156967 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| |||||| | ||| | || | || | || ||||| || Sbjct 156966 ATCCAGAAGGAATCGACCCTCCATCTCGTACTCCGACTTCGCGGTGGAAT 156917 >seq616 Length=1528 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || ||||| ||| | |||||||||||||| ||| || Sbjct 1328 CATGCAGATCTTCGTCAAGACGCTCACCGGAAAGACGATTACTCTTGAAGTTGAAGGCTC 1269 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| |||||| || || |||||||| ||||| || || || || || Sbjct 1268 TGACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCTCCAGACCA 1209 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| || || | |||||| || || | || || | || | ||||| ||||| Sbjct 1208 GCAGCGATTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACTTTGTCCGACTACAA 1149 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||| ||| | ||| | || | || | || || ||||| Sbjct 1148 CATTCAGAAGGAGTCAACCCTCCATCTCGTCCTTCGGCTTCGCGGAGGCAT 1098 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || |||||| | ||||| || || || || || Sbjct 366 CATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACGATTACCCTGGAGGTCGAGGGCTC 307 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | |||||| || || || ||||||||||| || || || || || Sbjct 306 TGATACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGACCA 247 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | |||||| || || | || || || || | ||||| ||||| Sbjct 246 GCAGCGCCTCATTTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACTTTGTCCGACTACAA 187 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| |||||| | ||| | || | || | || || ||||| Sbjct 186 CATCCAGAAGGAATCGACCCTCCATCTCGTCCTTCGGCTCCGCGGAGGCAT 136 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || |||| |||||| | || || || ||||||||| || Sbjct 138 CATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACGATCACACTGGAAGTGGAAGGATC 79 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| ||||||||| || || || || || ||||||||||| || || || || || Sbjct 78 CGACACGATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGACCA 19 Query 27107 ACAGCG 27112 ||||| Sbjct 18 GCAGCG 13 >seq871 Length=2590 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 ||| |||||||| || || || || || ||||| ||| | || || || ||||||||| Sbjct 495 CGCAATGCAGATCTTCGTGAAGACCCTCACCGGGAAGACGATCACCCTGGAAGTGGAAGG 554 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || ||| || |||| || || || || || ||||||||||| || || || || Sbjct 555 TTCTGACAGCATCGAGAACGTAAAGGCGAAGATCCAGGACAAAGAAGGTATTCCCCCTGA 614 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 ||| |||||||| || | |||||| || || | |||||| | ||| | ||| || Sbjct 615 TCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAAGACGGCCGAACCCTCAACGACTA 674 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| |||||||| ||||| || ||| | || | ||| | || ||||| Sbjct 675 CAACATCCAAAAGGAATCGACTTTGCATCTCGTGCTCCGTCTCCGTGGTGG 725 >seq5007 Length=89527 Score = 118 bits (130), Expect = 9e-22 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 ||||||||||| ||||| ||||| || || || ||| | || || || || || ||| Sbjct 22489 GCCATGCAGATCTTTGTGAAAACCCTCACAGGGAAGACGATCACGCTCGAGGTCGAAGGC 22430 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 ||||| | || |||| || || || || |||||||| |||||||| || || || Sbjct 22429 TCCGATACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCAGAC 22370 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || ||||| | || | |||||| || ||| | || ||| | || | ||||| ||| Sbjct 22369 CAGCAGCGCCTCATCTTCGCCGGAAAGCAACTCGAGGACGGACGCACGCTCTCCGACTAC 22310 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || ||||||||| | ||| | || | ||| |||| || ||||| Sbjct 22309 AACATCCAGAAAGAGTCGACCCTCCATCTCGTCCTTCGTCTGCGCGGAGGCAT 22257 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| ||||| || || || ||| | || || || || || || || Sbjct 22259 CATGCAGATCTTTGTGAAAACCCTCACAGGGAAGACGATCACGCTCGAGGTTGAGGGCTC 22200 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || || || || |||||||| |||||||| || || || || Sbjct 22199 CGATACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCAGACCA 22140 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | |||||| || ||| | || ||| | || | ||||| ||||| Sbjct 22139 GCAGCGCCTCATCTTCGCCGGAAAGCAACTCGAGGACGGACGCACGCTCTCCGACTACAA 22080 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| || ||||||||| | ||| | || | ||| |||| || || Sbjct 22079 CATTCAGAAAGAGTCGACCCTCCATCTCGTCCTTCGTCTGCGTGGGGG 22032 >seq611 Length=17302 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||| |||||| | || || || || || ||| || Sbjct 4847 CATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACGATCACACTCGAGGTCGAAGGATC 4788 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || || || || |||||||| ||||| || || || || || Sbjct 4787 GGACACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGACCA 4728 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| || || | ||| || || || ||||||| || ||| | ||||| ||||| Sbjct 4727 GCAGCGATTGATTTTCGCTGGAAAGCAGCTGGAAGATGGTCGCACCCTCTCCGACTACAA 4668 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||||||||| | ||| | || | || | || |||||||| Sbjct 4667 CATCCAGAAGGAGTCGACTCTCCATCTTGTCCTCCGACTCCGTGGTGGCAT 4617 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| || ||||| || | || || ||||| || ||| || Sbjct 5560 CATGCAGATCTTCGTCAAAACGCTCACCGGAAAAACCATCACCCTTGAGGTTGAAGGTTC 5501 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || |||| || || || || ||||| || ||||| || || || ||||| Sbjct 5500 GGATACCATCGAGAACGTGAAGGCCAAGATCCAAGATAAGGAAGGAATTCCCCCAGATCA 5441 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| || || | |||||| || || |||||||| | ||| | || |||||||| Sbjct 5440 GCAGCGATTGATCTTCGCCGGAAAGCAGTTGGAAGATGGCCGCACCCTCTCGGATTACAA 5381 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| ||||| || || | ||| | || | ||| | || || ||||| Sbjct 5380 CATTCAGAAGGAATCCACTCTCCATCTCGTCCTTCGTCTCCGAGGAGGCAT 5330 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || || || | || || ||||| || ||| || Sbjct 5332 CATGCAGATCTTCGTGAAGACGCTCACAGGAAAAACCATCACCCTTGAGGTTGAAGGTTC 5273 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || ||||| || ||||| ||||| || || || || || Sbjct 5272 CGATACCATTGAGAACGTGAAGGCCAAAATCCAGGACAAGGAAGGAATTCCCCCAGACCA 5213 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | |||||| ||||| ||||||| | || | ||||| ||||| Sbjct 5212 GCAGCGCCTCATCTTCGCCGGAAAACAGCTGGAAGATGGCCGCACTTTGTCCGACTACAA 5153 Query 27167 CATTCAAAAGGAGTCGAC 27184 ||| || ||||||||||| Sbjct 5152 CATCCAGAAGGAGTCGAC 5135 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 || || || || || || || ||| | || || || || || ||| |||||| | ||| Sbjct 9449 TTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTTGAAGGTTCCGACACTATT 9390 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 || | ||||| || || || ||||| ||||| || || || || || ||||| | Sbjct 9389 GAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAGCAGCGCCTC 9330 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176 || | |||||| || || ||||||| | || | || || ||||||||||| ||| Sbjct 9329 ATTTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACTCTCTCGGACTACAACATTCAGAAG 9270 Query 27177 GAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||| | ||| | ||| | ||| | || ||||| Sbjct 9269 GAGTCGACTCTCCATCTCGTTCTTCGTCTTCGTGGTGG 9232 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 || ||||| || || || ||||| || || |||||| | || || || || || || | Sbjct 9866 GCAATGCAAATCTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGGCT 9807 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || ||| | || |||| || || || || || ||||| ||||| || || || ||| Sbjct 9806 TCGGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGAT 9747 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || ||||| | || | |||||| || || | || || | ||| | || || ||| Sbjct 9746 CAGCAGCGCCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCTCGGACTAC 9687 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||||||||| | ||| | || | ||| | || || ||||| Sbjct 9686 AACATCCAGAAGGAGTCGACTCTCCATCTCGTCCTTCGTCTTCGCGGAGGCAT 9634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434886683575680