Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq825 120 3e-22 seq3295 102 7e-17 seq4054 84.2 2e-11 >seq825 Length=18329 Score = 120 bits (132), Expect = 3e-22 Identities = 193/274 (70%), Gaps = 5/274 (2%) Strand=Plus/Plus Query 6922 CTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTC 6981 |||||| ||||||||||| || | |||||||||||| || || ||| ||| ||||||| Sbjct 10682 CTGGAAGCCGTAGACCGGTCCGAGGTCGCCCTCCTCGCGCTCTGTGAATCCCAGCTTGTC 10741 Query 6982 CAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTT 7041 || || || || |||| ||| ||| |||||||| || | | ||| | ||| Sbjct 10742 GAGGAACTCCCGCTTTCCGTTCTCGTTCCAAATCTTCACTCCTTTTGCTGCGAGGTTCTT 10801 Query 7042 GGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCA-CGCCCTTCCAGTACA 7100 | ||||||| | | || | |||||| | ||||||||||| | ||||| ||||| | | Sbjct 10802 CGCGTTCGTGTCGGCGCTGATGAACCAGATGAGCTCCTCGACGATCGCCC-TCCAGAAGA 10860 Query 7101 CACGTTTCGTCGTCAGCAGCGGAAATTCGC---CCCGAAGGTTGTATCGGGCCTGTGTGC 7157 | ||||||||||| || ||||| | || | || || ||| || ||||| | | Sbjct 10861 CGCGTTTCGTCGTGAGAAGCGGCATCGTGCCATCGCGGAGCGAGTACCGCGCCTGCATTC 10920 Query 7158 CGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTC 7191 |||||| |||| || || || || || || || Sbjct 10921 CGAACAGTGAGATCGTGCCGGTGCCCGTGCGATC 10954 Score = 120 bits (132), Expect = 3e-22 Identities = 193/274 (70%), Gaps = 5/274 (2%) Strand=Plus/Minus Query 34154 GACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCGG 34213 || || || || || || || |||| ||||||| | ||||| || ||| || || Sbjct 10954 GATCGCACGGGCACCGGCACGATCTCACTGTTCGGAATGCAGGCGCGGTACTCGCTCCGC 10895 Query 34214 G---GCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCG-TGGTCGAGGA 34269 | || | ||||| || ||||||||||| || | ||||| ||||| | |||||||| Sbjct 10894 GATGGCACGATGCCGCTTCTCACGACGAAACGCGTCTTCTGGA-GGGCGATCGTCGAGGA 10836 Query 34270 GCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAA 34329 ||| | |||||| | || | | ||||||| | ||| | ||| | | || ||||| Sbjct 10835 GCTCATCTGGTTCATCAGCGCCGACACGAACGCGAAGAACCTCGCAGCAAAAGGAGTGAA 10776 Query 34330 GATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGA 34389 ||| ||| ||| |||| || || || || ||||||| ||| ||| || || || Sbjct 10775 GATTTGGAACGAGAACGGAAAGCGGGAGTTCCTCGACAAGCTGGGATTCACAGAGCGCGA 10716 Query 34390 GGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAG 34423 |||||||||| | || ||||||||||| |||||| Sbjct 10715 GGAGGGCGACCTCGGACCGGTCTACGGCTTCCAG 10682 >seq3295 Length=153373 Score = 102 bits (112), Expect = 7e-17 Identities = 186/272 (68%), Gaps = 3/272 (1%) Strand=Plus/Plus Query 34154 GACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCGG 34213 ||||| || || || || ||| || ||| ||||| | ||||| ||||| || || Sbjct 18013 GACCGCACGGGCACCGGCACCATCGGCGTCTTCGGAATGCAGGCGAGATACTCGCTGCGC 18072 Query 34214 ---GGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAG 34270 |||| | ||||||||||| || || || || | |||||||| | ||||||||| Sbjct 18073 AACGGCGCCATCCCGCTGCTGACCACAAAGCGCGTCTTCTGGAAGGCGATCGTCGAGGAG 18132 Query 34271 CTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAG 34330 || | |||||| | | || | ||| ||| | ||| | || || | || || | Sbjct 18133 CTCGTTTGGTTCATCCGTGGCGACACCAACGCGAAGAATCTGGCGGCGAAAGGCGTCAGA 18192 Query 34331 ATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAG 34390 |||||||| || ||| ||||| ||||| || || | | ||| |||| || ||| Sbjct 18193 ATCTGGGATGCGAACGCCTCTCGTGACTTCCTCGATAGTCTTGGGCTCCCGGAGCGCGAG 18252 Query 34391 GAGGGCGACTTGGGCCCGGTCTACGGGTTCCA 34422 || ||||| ||||| ||| |||| || ||||| Sbjct 18253 GAAGGCGATTTGGGGCCGATCTATGGATTCCA 18284 Score = 102 bits (112), Expect = 7e-17 Identities = 186/272 (68%), Gaps = 3/272 (1%) Strand=Plus/Minus Query 6923 TGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCC 6982 ||||| || |||| ||| ||||| ||||| ||||| || |||| ||| | | || Sbjct 18284 TGGAATCCATAGATCGGCCCCAAATCGCCTTCCTCGCGCTCCGGGAGCCCAAGACTATCG 18225 Query 6983 AGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTG 7042 || ||||| ||||| ||| || |||||||| | || || | || || | ||| Sbjct 18224 AGGAAGTCACGAGAGGCGTTCGCATCCCAGATTCTGACGCCTTTCGCCGCCAGATTCTTC 18165 Query 7043 GTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACA 7102 | ||| ||| | || | | |||||| | ||||||||||| | |||||||| | || Sbjct 18164 GCGTTGGTGTCGCCACGGATGAACCAAACGAGCTCCTCGACGATCGCCTTCCAGAAGACG 18105 Query 7103 CGTTTCGTCGTCAGCAGCGGAAATTCGCC---CCGAAGGTTGTATCGGGCCTGTGTGCCG 7159 || || || ||||||||||| | |||| || || ||||| ||||| | ||| Sbjct 18104 CGCTTTGTGGTCAGCAGCGGGATGGCGCCGTTGCGCAGCGAGTATCTCGCCTGCATTCCG 18045 Query 7160 AACACGGAGAGGGTCCCCGTCCCGGTCCGGTC 7191 || ||| || ||| || || || || ||||| Sbjct 18044 AAGACGCCGATGGTGCCGGTGCCCGTGCGGTC 18013 >seq4054 Length=291759 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 ||||| || |||||||||| || | ||||||| | |||| |||||| |||||||| Sbjct 64374 CCGCTTCTCACGACGAAACTCGTCAATTGGAAGGCGATCGTCGGGGAGCTCATGTGGTTC 64433 Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCT 34342 | || || | ||||||| | || | || | | || |||||||| |||| | Sbjct 64434 ATCAGCGGCGACACGAACGCGAACAATCTTGCTGCAAAAGGAGTGAAGATTTGGGTTGAG 64493 Query 34343 CACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTG 34402 |||| | || || || |||||| |||| || || | |||||||||||| | Sbjct 64494 AACGGAAAGAGGGAGTTCCTCGACAAGAGGGGACTCACAGATAACGAGGAGGGCGACCTC 64553 Query 34403 GGCCCGGTCTACGGGTTCCAG 34423 || ||||||||||| || ||| Sbjct 64554 GGGCCGGTCTACGGCTTTCAG 64574 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 6922 CTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTC 6981 ||| || ||||||||||| || | |||||||||||| | || || |||| |||||| Sbjct 64574 CTGAAAGCCGTAGACCGGCCCGAGGTCGCCCTCCTCGTTATCTGTGAGTCCCCTCTTGTC 64515 Query 6982 CAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTT 7041 || || || | |||| | |||| |||||||| || | | || | || Sbjct 64514 GAGGAACTCCCTCTTTCCGTTCTCAACCCAAATCTTCACTCCTTTTGCAGCAAGATTGTT 64455 Query 7042 GGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACAC 7101 | ||||||| | || || | |||||||| |||||| |||| | ||||||| | || Sbjct 64454 CGCGTTCGTGTCGCCGCTGATGAACCACATGAGCTCCCCGACGATCGCCTTCCAATTGAC 64395 Query 7102 ACGTTTCGTCGTCAGCAGCGG 7122 |||||||||| || ||||| Sbjct 64394 GAGTTTCGTCGTGAGAAGCGG 64374 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/95 (80%), Gaps = 3/95 (3%) Strand=Plus/Plus Query 34576 GATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT---CGCGAATGGGGAGCT 34632 |||||||||||| ||||||||||| ||| | ||||||| || || ||| ||||| || Sbjct 64818 GATGGCGCTCCCTCCGTGCCACACGCTCAGTCAATTCTGGGTGAGCGTGAAGGGGGAACT 64877 Query 34633 GTCCTGCCAGCTCTATCAACGATCGGGAGACATGG 34667 || || || ||||| ||||| || |||||||||| Sbjct 64878 CTCGTGTCAACTCTACCAACGCTCCGGAGACATGG 64912 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/95 (80%), Gaps = 3/95 (3%) Strand=Plus/Minus Query 6678 CCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCG---ACGTAGA 6734 |||||||||| || ||||| ||||| || || || || ||||| ||| || || ||| Sbjct 64912 CCATGTCTCCGGAGCGTTGGTAGAGTTGACACGAGAGTTCCCCCTTCACGCTCACCCAGA 64853 Query 6735 ATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATC 6769 |||| | ||| ||||||||||| |||||||||||| Sbjct 64852 ATTGACTGAGCGTGTGGCACGGAGGGAGCGCCATC 64818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448229710464480