Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq825 120 3e-22
seq3295 102 7e-17
seq4054 84.2 2e-11
>seq825
Length=18329
Score = 120 bits (132), Expect = 3e-22
Identities = 193/274 (70%), Gaps = 5/274 (2%)
Strand=Plus/Plus
Query 6922 CTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTC 6981
|||||| ||||||||||| || | |||||||||||| || || ||| ||| |||||||
Sbjct 10682 CTGGAAGCCGTAGACCGGTCCGAGGTCGCCCTCCTCGCGCTCTGTGAATCCCAGCTTGTC 10741
Query 6982 CAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTT 7041
|| || || || |||| ||| ||| |||||||| || | | ||| | |||
Sbjct 10742 GAGGAACTCCCGCTTTCCGTTCTCGTTCCAAATCTTCACTCCTTTTGCTGCGAGGTTCTT 10801
Query 7042 GGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCA-CGCCCTTCCAGTACA 7100
| ||||||| | | || | |||||| | ||||||||||| | ||||| ||||| | |
Sbjct 10802 CGCGTTCGTGTCGGCGCTGATGAACCAGATGAGCTCCTCGACGATCGCCC-TCCAGAAGA 10860
Query 7101 CACGTTTCGTCGTCAGCAGCGGAAATTCGC---CCCGAAGGTTGTATCGGGCCTGTGTGC 7157
| ||||||||||| || ||||| | || | || || ||| || ||||| | |
Sbjct 10861 CGCGTTTCGTCGTGAGAAGCGGCATCGTGCCATCGCGGAGCGAGTACCGCGCCTGCATTC 10920
Query 7158 CGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTC 7191
|||||| |||| || || || || || || ||
Sbjct 10921 CGAACAGTGAGATCGTGCCGGTGCCCGTGCGATC 10954
Score = 120 bits (132), Expect = 3e-22
Identities = 193/274 (70%), Gaps = 5/274 (2%)
Strand=Plus/Minus
Query 34154 GACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCGG 34213
|| || || || || || || |||| ||||||| | ||||| || ||| || ||
Sbjct 10954 GATCGCACGGGCACCGGCACGATCTCACTGTTCGGAATGCAGGCGCGGTACTCGCTCCGC 10895
Query 34214 G---GCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCG-TGGTCGAGGA 34269
| || | ||||| || ||||||||||| || | ||||| ||||| | ||||||||
Sbjct 10894 GATGGCACGATGCCGCTTCTCACGACGAAACGCGTCTTCTGGA-GGGCGATCGTCGAGGA 10836
Query 34270 GCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAA 34329
||| | |||||| | || | | ||||||| | ||| | ||| | | || |||||
Sbjct 10835 GCTCATCTGGTTCATCAGCGCCGACACGAACGCGAAGAACCTCGCAGCAAAAGGAGTGAA 10776
Query 34330 GATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGA 34389
||| ||| ||| |||| || || || || ||||||| ||| ||| || || ||
Sbjct 10775 GATTTGGAACGAGAACGGAAAGCGGGAGTTCCTCGACAAGCTGGGATTCACAGAGCGCGA 10716
Query 34390 GGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAG 34423
|||||||||| | || ||||||||||| ||||||
Sbjct 10715 GGAGGGCGACCTCGGACCGGTCTACGGCTTCCAG 10682
>seq3295
Length=153373
Score = 102 bits (112), Expect = 7e-17
Identities = 186/272 (68%), Gaps = 3/272 (1%)
Strand=Plus/Plus
Query 34154 GACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCGG 34213
||||| || || || || ||| || ||| ||||| | ||||| ||||| || ||
Sbjct 18013 GACCGCACGGGCACCGGCACCATCGGCGTCTTCGGAATGCAGGCGAGATACTCGCTGCGC 18072
Query 34214 ---GGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAG 34270
|||| | ||||||||||| || || || || | |||||||| | |||||||||
Sbjct 18073 AACGGCGCCATCCCGCTGCTGACCACAAAGCGCGTCTTCTGGAAGGCGATCGTCGAGGAG 18132
Query 34271 CTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAG 34330
|| | |||||| | | || | ||| ||| | ||| | || || | || || |
Sbjct 18133 CTCGTTTGGTTCATCCGTGGCGACACCAACGCGAAGAATCTGGCGGCGAAAGGCGTCAGA 18192
Query 34331 ATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAG 34390
|||||||| || ||| ||||| ||||| || || | | ||| |||| || |||
Sbjct 18193 ATCTGGGATGCGAACGCCTCTCGTGACTTCCTCGATAGTCTTGGGCTCCCGGAGCGCGAG 18252
Query 34391 GAGGGCGACTTGGGCCCGGTCTACGGGTTCCA 34422
|| ||||| ||||| ||| |||| || |||||
Sbjct 18253 GAAGGCGATTTGGGGCCGATCTATGGATTCCA 18284
Score = 102 bits (112), Expect = 7e-17
Identities = 186/272 (68%), Gaps = 3/272 (1%)
Strand=Plus/Minus
Query 6923 TGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCC 6982
||||| || |||| ||| ||||| ||||| ||||| || |||| ||| | | ||
Sbjct 18284 TGGAATCCATAGATCGGCCCCAAATCGCCTTCCTCGCGCTCCGGGAGCCCAAGACTATCG 18225
Query 6983 AGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTG 7042
|| ||||| ||||| ||| || |||||||| | || || | || || | |||
Sbjct 18224 AGGAAGTCACGAGAGGCGTTCGCATCCCAGATTCTGACGCCTTTCGCCGCCAGATTCTTC 18165
Query 7043 GTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACA 7102
| ||| ||| | || | | |||||| | ||||||||||| | |||||||| | ||
Sbjct 18164 GCGTTGGTGTCGCCACGGATGAACCAAACGAGCTCCTCGACGATCGCCTTCCAGAAGACG 18105
Query 7103 CGTTTCGTCGTCAGCAGCGGAAATTCGCC---CCGAAGGTTGTATCGGGCCTGTGTGCCG 7159
|| || || ||||||||||| | |||| || || ||||| ||||| | |||
Sbjct 18104 CGCTTTGTGGTCAGCAGCGGGATGGCGCCGTTGCGCAGCGAGTATCTCGCCTGCATTCCG 18045
Query 7160 AACACGGAGAGGGTCCCCGTCCCGGTCCGGTC 7191
|| ||| || ||| || || || || |||||
Sbjct 18044 AAGACGCCGATGGTGCCGGTGCCCGTGCGGTC 18013
>seq4054
Length=291759
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/201 (69%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282
||||| || |||||||||| || | ||||||| | |||| |||||| ||||||||
Sbjct 64374 CCGCTTCTCACGACGAAACTCGTCAATTGGAAGGCGATCGTCGGGGAGCTCATGTGGTTC 64433
Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCT 34342
| || || | ||||||| | || | || | | || |||||||| |||| |
Sbjct 64434 ATCAGCGGCGACACGAACGCGAACAATCTTGCTGCAAAAGGAGTGAAGATTTGGGTTGAG 64493
Query 34343 CACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTG 34402
|||| | || || || |||||| |||| || || | |||||||||||| |
Sbjct 64494 AACGGAAAGAGGGAGTTCCTCGACAAGAGGGGACTCACAGATAACGAGGAGGGCGACCTC 64553
Query 34403 GGCCCGGTCTACGGGTTCCAG 34423
|| ||||||||||| || |||
Sbjct 64554 GGGCCGGTCTACGGCTTTCAG 64574
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/201 (69%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 6922 CTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTC 6981
||| || ||||||||||| || | |||||||||||| | || || |||| ||||||
Sbjct 64574 CTGAAAGCCGTAGACCGGCCCGAGGTCGCCCTCCTCGTTATCTGTGAGTCCCCTCTTGTC 64515
Query 6982 CAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTT 7041
|| || || | |||| | |||| |||||||| || | | || | ||
Sbjct 64514 GAGGAACTCCCTCTTTCCGTTCTCAACCCAAATCTTCACTCCTTTTGCAGCAAGATTGTT 64455
Query 7042 GGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACAC 7101
| ||||||| | || || | |||||||| |||||| |||| | ||||||| | ||
Sbjct 64454 CGCGTTCGTGTCGCCGCTGATGAACCACATGAGCTCCCCGACGATCGCCTTCCAATTGAC 64395
Query 7102 ACGTTTCGTCGTCAGCAGCGG 7122
|||||||||| || |||||
Sbjct 64394 GAGTTTCGTCGTGAGAAGCGG 64374
Score = 84.2 bits (92), Expect = 2e-11
Identities = 76/95 (80%), Gaps = 3/95 (3%)
Strand=Plus/Plus
Query 34576 GATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT---CGCGAATGGGGAGCT 34632
|||||||||||| ||||||||||| ||| | ||||||| || || ||| ||||| ||
Sbjct 64818 GATGGCGCTCCCTCCGTGCCACACGCTCAGTCAATTCTGGGTGAGCGTGAAGGGGGAACT 64877
Query 34633 GTCCTGCCAGCTCTATCAACGATCGGGAGACATGG 34667
|| || || ||||| ||||| || ||||||||||
Sbjct 64878 CTCGTGTCAACTCTACCAACGCTCCGGAGACATGG 64912
Score = 84.2 bits (92), Expect = 2e-11
Identities = 76/95 (80%), Gaps = 3/95 (3%)
Strand=Plus/Minus
Query 6678 CCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCG---ACGTAGA 6734
|||||||||| || ||||| ||||| || || || || ||||| ||| || || |||
Sbjct 64912 CCATGTCTCCGGAGCGTTGGTAGAGTTGACACGAGAGTTCCCCCTTCACGCTCACCCAGA 64853
Query 6735 ATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATC 6769
|||| | ||| ||||||||||| ||||||||||||
Sbjct 64852 ATTGACTGAGCGTGTGGCACGGAGGGAGCGCCATC 64818
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448229710464480
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