Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq4364 118 7e-22 seq611 102 6e-17 seq4382 86.0 4e-12 seq616 86.0 4e-12 >seq4364 Length=177085 Score = 118 bits (130), Expect = 7e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || |||||||| || || |||||||| || ||||| || | Sbjct 157147 AATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACGATCACCCTGGAAGTCGAGGGTTC 157088 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| | | || || || ||||||||||| | || |||||||| Sbjct 157087 GGACACCATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCAGATCA 157028 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || || ||||| || || || ||||||| |||||| | ||||||||| Sbjct 157027 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAAGACGGTCGCACTCTCTCCGATTACAA 156968 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || || || Sbjct 156967 CATCCAGAAGGAATCGAC 156950 >seq611 Length=17302 Score = 102 bits (112), Expect = 6e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 23614 CAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGAC 23673 ||||| ||||| ||||| ||||| ||||| ||||||||||| || || || | | ||| Sbjct 6177 CAGATCTTCGTCAAAACGCTCACCGGAAAGACGATCACTCTTGAGGTCGAAGGCTCTGAC 6118 Query 23674 ACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAG 23733 || |||| | | || ||||| || || ||||| | || ||||| || ||| Sbjct 6117 ACGATTGAGAACGTGAAGGCCAAAATCCAAGATAAGGAAGGAATTCCCCCAGACCAGCAG 6058 Query 23734 CGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATA 23793 || | || || |||||||| || || || || | |||||||| ||| |||||||| Sbjct 6057 CGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGTCGCACTTTGTCCGACTACAACATC 5998 Query 23794 CAAAAAGAGTCCAC 23807 || ||||| ||||| Sbjct 5997 CAGAAAGAATCCAC 5984 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| ||||||||||| || || || ||||| ||||| || || | | Sbjct 9864 AATGCAAATCTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGGCTTC 9805 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| | || ||| | || | || || ||||| ||||| | || ||||||| Sbjct 9804 GGACACCATCGAGAATGTGAAGGC-CAAGATCCAGGACAAGGAAGGAATTCCCCCAGATC 9746 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||||| | || || ||||| || || || || || | ||||| | || |||| Sbjct 9745 AGCAGCGCCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCTCGGACTACA 9686 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || ||||| || Sbjct 9685 ACATCCAGAAGGAGTCGAC 9667 >seq4382 Length=33595 Score = 86.0 bits (94), Expect = 4e-12 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||| |||| || |||||||||||||| || || || || Sbjct 11645 ATGCAGATCTTCGTGCGAACGTTCACCGGCAAAACGATCACTCTGGACGTGGAGAGCAGC 11704 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| | || ||||| | ||||| || || || ||||| || || || ||| || | Sbjct 11705 GACGCGGTGGAAATCGTGAAACAGAAGATCGCGGACAAGGATGGAGTTCCGGCAAAATTG 11764 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| | || | | |||||||| |||||||| | |||| | | | ||||||| Sbjct 11765 CAGCGACTCATCTACGGCGGCAAACTCCTGGAAGAGGGACGCCCGGTTGCCGATTAC 11821 >seq616 Length=1528 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || ||||| || || || || || | | Sbjct 365 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACGATTACCCTGGAGGTCGAGGGCTCT 306 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| | ||| || || ||||||||||| | || ||||| || Sbjct 305 GATACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGACCAG 246 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || ||||| || || || || || | |||||||| ||| |||||| Sbjct 245 CAGCGCCTCATTTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACTTTGTCCGACTACAAC 186 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || || || Sbjct 185 ATCCAGAAGGAATCGAC 169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337985566883672