Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq4364 118 7e-22
seq611 102 6e-17
seq4382 86.0 4e-12
seq616 86.0 4e-12
>seq4364
Length=177085
Score = 118 bits (130), Expect = 7e-22
Identities = 145/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| ||||| || |||||||| || || |||||||| || ||||| || |
Sbjct 157147 AATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACGATCACCCTGGAAGTCGAGGGTTC 157088
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| |||| | | || || || ||||||||||| | || ||||||||
Sbjct 157087 GGACACCATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCAGATCA 157028
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||||| || || ||||| || || || ||||||| |||||| | |||||||||
Sbjct 157027 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAAGACGGTCGCACTCTCTCCGATTACAA 156968
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || || || ||
Sbjct 156967 CATCCAGAAGGAATCGAC 156950
>seq611
Length=17302
Score = 102 bits (112), Expect = 6e-17
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 23614 CAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGAC 23673
||||| ||||| ||||| ||||| ||||| ||||||||||| || || || | | |||
Sbjct 6177 CAGATCTTCGTCAAAACGCTCACCGGAAAGACGATCACTCTTGAGGTCGAAGGCTCTGAC 6118
Query 23674 ACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAG 23733
|| |||| | | || ||||| || || ||||| | || ||||| || |||
Sbjct 6117 ACGATTGAGAACGTGAAGGCCAAAATCCAAGATAAGGAAGGAATTCCCCCAGACCAGCAG 6058
Query 23734 CGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATA 23793
|| | || || |||||||| || || || || | |||||||| ||| ||||||||
Sbjct 6057 CGCCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGTCGCACTTTGTCCGACTACAACATC 5998
Query 23794 CAAAAAGAGTCCAC 23807
|| ||||| |||||
Sbjct 5997 CAGAAAGAATCCAC 5984
Score = 86.0 bits (94), Expect = 4e-12
Identities = 140/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| || ||||| ||||||||||| || || || ||||| ||||| || || | |
Sbjct 9864 AATGCAAATCTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGGCTTC 9805
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|||||| | || ||| | || | || || ||||| ||||| | || |||||||
Sbjct 9804 GGACACCATCGAGAATGTGAAGGC-CAAGATCCAGGACAAGGAAGGAATTCCCCCAGATC 9746
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| ||||| | || || ||||| || || || || || | ||||| | || ||||
Sbjct 9745 AGCAGCGCCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCTCGGACTACA 9686
Query 23789 ACATACAAAAAGAGTCCAC 23807
|||| || || ||||| ||
Sbjct 9685 ACATCCAGAAGGAGTCGAC 9667
>seq4382
Length=33595
Score = 86.0 bits (94), Expect = 4e-12
Identities = 125/177 (71%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| ||| |||| || |||||||||||||| || || || ||
Sbjct 11645 ATGCAGATCTTCGTGCGAACGTTCACCGGCAAAACGATCACTCTGGACGTGGAGAGCAGC 11704
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||| | || ||||| | ||||| || || || ||||| || || || ||| || |
Sbjct 11705 GACGCGGTGGAAATCGTGAAACAGAAGATCGCGGACAAGGATGGAGTTCCGGCAAAATTG 11764
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
||||| | || | | |||||||| |||||||| | |||| | | | |||||||
Sbjct 11765 CAGCGACTCATCTACGGCGGCAAACTCCTGGAAGAGGGACGCCCGGTTGCCGATTAC 11821
>seq616
Length=1528
Score = 86.0 bits (94), Expect = 4e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || |||||||| || || ||||| || || || || || | |
Sbjct 365 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACGATTACCCTGGAGGTCGAGGGCTCT 306
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| || | |||| | ||| || || ||||||||||| | || ||||| ||
Sbjct 305 GATACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGACCAG 246
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||||| | || || ||||| || || || || || | |||||||| ||| ||||||
Sbjct 245 CAGCGCCTCATTTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACTTTGTCCGACTACAAC 186
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || || || || ||
Sbjct 185 ATCCAGAAGGAATCGAC 169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337985566883672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |