Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq5716 192 8e-44
seq5071 105 1e-17
>seq5716
Length=132174
Score = 192 bits (212), Expect = 8e-44
Identities = 500/763 (66%), Gaps = 31/763 (4%)
Strand=Plus/Minus
Query 75701 AGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTA 75760
||||||||||| ||||| ||||| || |||||||||| || | |||| ||||||| ||
Sbjct 122704 AGGAGATGAGGGTTAACGATTTGGAAGTCTCCAGACAGCACGCGTCGACTGTAAATGTTG 122645
Query 75761 CTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGC 75820
|| || || || | |||||||||||||| | |||||||| ||||| || ||||||
Sbjct 122644 GACGTGTACGGCTCGATGGATTCATTGTTTCCAAGGATTTGAGCGGTTGATGCGGTCGGC 122585
Query 75821 ATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATAT 75880
|| || || | | | ||| || | | || || | |||||| ||||| ||| ||
Sbjct 122584 ATCGGGGCAAGAAGCAGACTGTTGCGTACCCCGTGCTTCGCGATTTTCTCTTTGAGAGAT 122525
Query 75881 TTCCAATCCCAAAGATCTGATGGTACAAC------------------ATCCCAGAGATCG 75922
||| || || |||||| || || || | ||| | ||
Sbjct 122524 GCCCAGTCACACTGATCTGTAGGGACGACTGGTTTGCCGTCTTCTGTTTGCCACATTTCA 122465
Query 75923 TATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTT 75982
|| || |||||||| | ||| | || || | ||| |||||||||| || | ||
Sbjct 122464 TACTGCAGAATTCCTTGGCTCACTGGAGACCCCTCATAGGTTTCGTAAGGACCATATTTC 122405
Query 75983 TCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTA 76042
||||| |||||||| ||| || | || |||| ||||||||||| || || |||
Sbjct 122404 TCAGCAAGTTCGCATGACGCTTCCAGAGCTGCGTAGTAAATTGTTTCAAAGATTCGCTTG 122345
Query 76043 TTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCT 76102
|| | |||| | || | | | || || || | | | || || || ||||| ||
Sbjct 122344 TTCACATCTCGAGCCTGAGGGCTGGTGAACGGGTGGCGCATTAGCATGAAGGCATCAGCC 122285
Query 76103 AGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGA 76162
| ||||||||||| || || || || | ||| | ||| || || |||||||||| ||
Sbjct 122284 AAACCCTGAACTCCGATTCCTATTGGGCGATGACGCTTGTTAGAGGTTTCAGCTTCCGGT 122225
Query 76163 ATAGGGTAATAATTAATATCTATAATTTTATTGAGATT---TCTGACAACTACTT--TAA 76217
||||| || || || || || ||||| || | ||| | ||| || ||| |||
Sbjct 122224 ATAGGATAGTAGTTGCAGTCAATTATTTTGTTCAAATTGCGTGTGATGAC--CTTGGTAA 122167
Query 76218 CCACGTCCTTTAGTTTGAGAAAATCAAA---TTTTCCATCTATCACAAACATATTAAGAG 76274
| || | || || | | || || || |||| ||||||| | || | ||
Sbjct 122166 TC---TCGTGAAGCTTTTCATAGTCGAAGGTCTTGTCATCCTTCACAAATCTGTTCAAAG 122110
Query 76275 CTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCG 76334
| | || || ||||| ||||| || || |||| | | || || | ||| || |
Sbjct 122109 CGACGGAGGCCAGATTGCAAACAGCGACTTCATCTGGGGACGAGTACTGCACTATTTCGG 122050
Query 76335 TGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATG 76394
|||| ||||| |||||||| ||||| | ||| | ||||| |||| || ||||
Sbjct 122049 TGCACAGATTTGAGCACTTGATCGTTCCCAAATTCTTCTGGTTAGACTTTCGATTGCATG 121990
Query 76395 AGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGA 76437
|| || ||||| | | |||||||| ||||| ||||| ||
Sbjct 121989 CATCTTTGTAAAGCATGTAAGGAGTTCCGGTTTCGATCTGCGA 121947
Score = 134 bits (148), Expect = 2e-26
Identities = 179/246 (73%), Gaps = 6/246 (2%)
Strand=Plus/Minus
Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052
|||||| ||||| || | ||||| | ||| || || ||||| || || | ||| ||
Sbjct 121133 AGTTCCGGCATTGAAAAGCGTAGGCGTTGCGTGTGTAAACCAGCGATCGGACATTAGGTT 121074
Query 77053 GTATGTTTCAATAACTGCTTCTAT---ATCCCATTGATGAATTCCTACAGCGACACGCAT 77109
||| ||||||||| | ||||| || ||| ||| || || || |||||||| |||||
Sbjct 121073 GTAAGTTTCAATAGCGGCTTCAATTGAATCT--TTG-TGGATACCCACAGCGACTCGCAT 121017
Query 77110 CAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTC 77169
|| || ||||| || || || ||| || | || |||||||||||||| || ||
Sbjct 121016 CAGCAAGTGCTGTGGACGCTCAACAACTTTTTGGTTGATTTTCAACAAGTAAGAGCGCTC 120957
Query 77170 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATT 77229
||| ||||| ||||| ||||| |||||||||| || | ||||| | |||| | |||||
Sbjct 120956 CAACGTTTTGAAACCGAAATACGTGTATGAAAAATCGCGATCGTAGACAATAGCTGAATT 120897
Query 77230 TAGTTT 77235
| |||
Sbjct 120896 CAATTT 120891
Score = 93.3 bits (102), Expect = 6e-14
Identities = 120/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 77348 TTTTTTGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCA 77407
|| ||||| | |||||| | ||||||||||| |||||||| ||||| || || |||||
Sbjct 120735 TTCTTTGTCTGCTTGTGCAAGTTCGATACGGCGATTCTAGCTGCTAGGATGGCGTAGTCG 120676
Query 77408 GGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTA 77467
||||| | ||| || || || ||| |||| || || | | |||| | | | | |||
Sbjct 120675 GGATGCTTTGTCGTCATGGCTGCAGCTGTTTCGGCAGCGAGATTATCAAGTGCAACTGTA 120616
Query 77468 GTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTTTGA 77513
| ||| || || || || ||||| | |||||||| | |||| ||
Sbjct 120615 GAAACACCCTTGTACAGACCTTGTAATACTTTCATCGTGATTTCGA 120570
>seq5071
Length=368534
Score = 105 bits (116), Expect = 1e-17
Identities = 115/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 46622 ACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAA 46681
|||| | ||||| || || | ||| ||||||||||| | ||| | ||||||
Sbjct 135093 ACATGAGGCATGCGAAGTCGCGATGTAGGCCTTCATCCCGGGAAATGAGTTCGTTGCTGT 135152
Query 46682 ATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741
||||| |||||||| || ||||||||||| | ||| ||||| || ||||| ||||| |
Sbjct 135153 GGGTGAGGCCAGGCATGAGACCACGCTTTTTCAACCAGAATATGGCAGCGAACGATCCTG 135212
Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGA 46774
| ||||| ||||| || ||||| ||||| ||||
Sbjct 135213 AGAAGAAAATGCCCTCCACAGCAGCGAAGGCGA 135245
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712882409258880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |