Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5716 192 8e-44 seq5071 105 1e-17 >seq5716 Length=132174 Score = 192 bits (212), Expect = 8e-44 Identities = 500/763 (66%), Gaps = 31/763 (4%) Strand=Plus/Minus Query 75701 AGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTA 75760 ||||||||||| ||||| ||||| || |||||||||| || | |||| ||||||| || Sbjct 122704 AGGAGATGAGGGTTAACGATTTGGAAGTCTCCAGACAGCACGCGTCGACTGTAAATGTTG 122645 Query 75761 CTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGC 75820 || || || || | |||||||||||||| | |||||||| ||||| || |||||| Sbjct 122644 GACGTGTACGGCTCGATGGATTCATTGTTTCCAAGGATTTGAGCGGTTGATGCGGTCGGC 122585 Query 75821 ATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATAT 75880 || || || | | | ||| || | | || || | |||||| ||||| ||| || Sbjct 122584 ATCGGGGCAAGAAGCAGACTGTTGCGTACCCCGTGCTTCGCGATTTTCTCTTTGAGAGAT 122525 Query 75881 TTCCAATCCCAAAGATCTGATGGTACAAC------------------ATCCCAGAGATCG 75922 ||| || || |||||| || || || | ||| | || Sbjct 122524 GCCCAGTCACACTGATCTGTAGGGACGACTGGTTTGCCGTCTTCTGTTTGCCACATTTCA 122465 Query 75923 TATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTT 75982 || || |||||||| | ||| | || || | ||| |||||||||| || | || Sbjct 122464 TACTGCAGAATTCCTTGGCTCACTGGAGACCCCTCATAGGTTTCGTAAGGACCATATTTC 122405 Query 75983 TCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTA 76042 ||||| |||||||| ||| || | || |||| ||||||||||| || || ||| Sbjct 122404 TCAGCAAGTTCGCATGACGCTTCCAGAGCTGCGTAGTAAATTGTTTCAAAGATTCGCTTG 122345 Query 76043 TTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCT 76102 || | |||| | || | | | || || || | | | || || || ||||| || Sbjct 122344 TTCACATCTCGAGCCTGAGGGCTGGTGAACGGGTGGCGCATTAGCATGAAGGCATCAGCC 122285 Query 76103 AGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGA 76162 | ||||||||||| || || || || | ||| | ||| || || |||||||||| || Sbjct 122284 AAACCCTGAACTCCGATTCCTATTGGGCGATGACGCTTGTTAGAGGTTTCAGCTTCCGGT 122225 Query 76163 ATAGGGTAATAATTAATATCTATAATTTTATTGAGATT---TCTGACAACTACTT--TAA 76217 ||||| || || || || || ||||| || | ||| | ||| || ||| ||| Sbjct 122224 ATAGGATAGTAGTTGCAGTCAATTATTTTGTTCAAATTGCGTGTGATGAC--CTTGGTAA 122167 Query 76218 CCACGTCCTTTAGTTTGAGAAAATCAAA---TTTTCCATCTATCACAAACATATTAAGAG 76274 | || | || || | | || || || |||| ||||||| | || | || Sbjct 122166 TC---TCGTGAAGCTTTTCATAGTCGAAGGTCTTGTCATCCTTCACAAATCTGTTCAAAG 122110 Query 76275 CTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCG 76334 | | || || ||||| ||||| || || |||| | | || || | ||| || | Sbjct 122109 CGACGGAGGCCAGATTGCAAACAGCGACTTCATCTGGGGACGAGTACTGCACTATTTCGG 122050 Query 76335 TGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATG 76394 |||| ||||| |||||||| ||||| | ||| | ||||| |||| || |||| Sbjct 122049 TGCACAGATTTGAGCACTTGATCGTTCCCAAATTCTTCTGGTTAGACTTTCGATTGCATG 121990 Query 76395 AGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGA 76437 || || ||||| | | |||||||| ||||| ||||| || Sbjct 121989 CATCTTTGTAAAGCATGTAAGGAGTTCCGGTTTCGATCTGCGA 121947 Score = 134 bits (148), Expect = 2e-26 Identities = 179/246 (73%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| ||||| || | ||||| | ||| || || ||||| || || | ||| || Sbjct 121133 AGTTCCGGCATTGAAAAGCGTAGGCGTTGCGTGTGTAAACCAGCGATCGGACATTAGGTT 121074 Query 77053 GTATGTTTCAATAACTGCTTCTAT---ATCCCATTGATGAATTCCTACAGCGACACGCAT 77109 ||| ||||||||| | ||||| || ||| ||| || || || |||||||| ||||| Sbjct 121073 GTAAGTTTCAATAGCGGCTTCAATTGAATCT--TTG-TGGATACCCACAGCGACTCGCAT 121017 Query 77110 CAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTC 77169 || || ||||| || || || ||| || | || |||||||||||||| || || Sbjct 121016 CAGCAAGTGCTGTGGACGCTCAACAACTTTTTGGTTGATTTTCAACAAGTAAGAGCGCTC 120957 Query 77170 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATT 77229 ||| ||||| ||||| ||||| |||||||||| || | ||||| | |||| | ||||| Sbjct 120956 CAACGTTTTGAAACCGAAATACGTGTATGAAAAATCGCGATCGTAGACAATAGCTGAATT 120897 Query 77230 TAGTTT 77235 | ||| Sbjct 120896 CAATTT 120891 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 77348 TTTTTTGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCA 77407 || ||||| | |||||| | ||||||||||| |||||||| ||||| || || ||||| Sbjct 120735 TTCTTTGTCTGCTTGTGCAAGTTCGATACGGCGATTCTAGCTGCTAGGATGGCGTAGTCG 120676 Query 77408 GGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTA 77467 ||||| | ||| || || || ||| |||| || || | | |||| | | | | ||| Sbjct 120675 GGATGCTTTGTCGTCATGGCTGCAGCTGTTTCGGCAGCGAGATTATCAAGTGCAACTGTA 120616 Query 77468 GTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTTTGA 77513 | ||| || || || || ||||| | |||||||| | |||| || Sbjct 120615 GAAACACCCTTGTACAGACCTTGTAATACTTTCATCGTGATTTCGA 120570 >seq5071 Length=368534 Score = 105 bits (116), Expect = 1e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 46622 ACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAA 46681 |||| | ||||| || || | ||| ||||||||||| | ||| | |||||| Sbjct 135093 ACATGAGGCATGCGAAGTCGCGATGTAGGCCTTCATCCCGGGAAATGAGTTCGTTGCTGT 135152 Query 46682 ATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741 ||||| |||||||| || ||||||||||| | ||| ||||| || ||||| ||||| | Sbjct 135153 GGGTGAGGCCAGGCATGAGACCACGCTTTTTCAACCAGAATATGGCAGCGAACGATCCTG 135212 Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGA 46774 | ||||| ||||| || ||||| ||||| |||| Sbjct 135213 AGAAGAAAATGCCCTCCACAGCAGCGAAGGCGA 135245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712882409258880