Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq2290 134 2e-26
seq4924 89.7 6e-13
seq6693 87.8 2e-12
>seq2290
Length=1989
Score = 134 bits (148), Expect = 2e-26
Identities = 140/184 (76%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 145762 TGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCC 145821
||||| | ||||| ||||||||| | ||||||||| || ||||||||||| |||||
Sbjct 903 TGGGCCATCATGTGGGTCAGCAGAGCGTAGCTGGCGATATTGAAGGGCACACCCAGGAAA 962
Query 145822 ATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGG 145881
|| ||| | ||||||||| ||||||||||| |||| || | || || |||||||||
Sbjct 963 ATATCCGCACTGCGCTGGTAGAGCTGGCAGGACAGCTTGCCATCGGCTACATAGAACTGG 1022
Query 145882 CACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTG 145941
||||| |||||| || ||||| ||||| | || |||||| ||||||||| | |
Sbjct 1023 AACAGGGCGTGGCAAGGGGGCAGAGCCATCTGGCCCACATCCGCCACGTTCCAGGCCGAG 1082
Query 145942 AGGA 145945
| ||
Sbjct 1083 ACGA 1086
>seq4924
Length=20857
Score = 89.7 bits (98), Expect = 6e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 145762 TGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCC 145821
|| |||| ||||| || || || |||||||| |||||||||||||| || || ||
Sbjct 480 TGCGCGATCATGTGAGTGAGGAGACCATAGCTGGCGATGTTGAAGGGCACTCCAAGGGCC 421
Query 145822 ATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGG 145881
|| || || || |||||||| || || || || || |||||| | || ||||||||
Sbjct 420 ATATCGCCGGAACGCTGGTATAGTTGACACGACAGTTCCCCGTCGCTTACATAGAACTGA 361
Query 145882 CACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910
|||| | ||||| || |||| |||||
Sbjct 360 CACATGGTATGGCACGGTGGCAATGCCAT 332
Score = 89.7 bits (98), Expect = 6e-13
Identities = 94/124 (76%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 145762 TGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCC 145821
|| || | ||||| ||| || || ||||||||||||||||||||||| || || ||
Sbjct 701 TGTGCTATCATGTGGGTTAGAAGACCATAGCTGGCTATGTTGAAGGGCACTCCAAGGGCC 642
Query 145822 ATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGG 145881
|| || || || |||||||||| |||||| || || || || | |||||||||||
Sbjct 641 ATATCGCCGGAACGCTGGTACAACTGGCACGACAGTTCGCCATCGCTGACGTAGAACTGA 582
Query 145882 CACA 145885
||||
Sbjct 581 CACA 578
>seq6693
Length=129131
Score = 87.8 bits (96), Expect = 2e-12
Identities = 110/148 (74%), Gaps = 6/148 (4%)
Strand=Plus/Minus
Query 146123 CGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGG---AGAGCT 146179
|||||||| | || || || || | |||||||||||||||||| ||||| || |||
Sbjct 98497 CGAGGAAGGCGCGCGAGCCATTCGGCTCCCAGATCTTGACGCCCTTCGCGCTCAAGTGCT 98438
Query 146180 CATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGA 146239
||| | || ||| || | ||||||||| | ||||| || |||| ||| ||||||
Sbjct 98437 --TTGCATTC-GTGTCGCCACGGATGAACCACAAGAGCTCCTCCAGGATACCCTTCCAGA 98381
Query 146240 AGACCCTCTTGGTGGTCAGCAGGGGGAA 146267
|||||| ||| || ||||| || || ||
Sbjct 98380 AGACCCGCTTCGTCGTCAGAAGTGGCAA 98353
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 590021406540400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |