Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq4834 131 1e-25 seq2066 129 5e-25 seq5063 111 1e-19 seq7156 87.8 2e-12 seq6645 87.8 2e-12 >seq4834 Length=88581 Score = 131 bits (144), Expect = 1e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| |||||||| || ||||||||||| || | ||| || ||||| Sbjct 21131 ACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGAGTACGGCCGTCCTCA 21190 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||||||||| || ||||||| ||||| || |||||||| ||||| ||||| ||| | Sbjct 21191 AGCTGTTTTCCGGCAAAGATGAGGCGCTGTTGGTCGGGAGGGATGCCTTCCTTATCTTGA 21250 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| ||||||| ||| ||||| |||| ||| | || || Sbjct 21251 ATCTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCT-TCGACTTCGAGGGTGATGGTCTT 21309 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || || || ||||| || |||||| Sbjct 21310 TCCGGTGAGCGTCTTGACAAAGATTTGCATG 21340 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| || || |||||||| ||| | ||||| |||||| Sbjct 22336 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGATAACGTGCGGCCGTCCTCG 22395 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| ||| ||||||| || ||||| || ||||| ||||| ||||| ||| | Sbjct 22396 AGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGAGGGATGCCTTCCTTATCTTGA 22455 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| || |||| | ||||| || | ||| | || || Sbjct 22456 ATCTTCGCCTTCACGTTCTCGATAGTATCCGAGGCTTCGACTTCAAGGGTGATTGTCTTC 22515 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || || || || || ||||||||| Sbjct 22516 CCGGTAAGCGTCTTCACGAAGATCTGCATG 22545 >seq2066 Length=2850 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | || | |||| ||| | || || || ||||| |||||||| || | Sbjct 1433 CCACCGCGAAGTCGGAGAACCAGGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCCGAC 1492 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| |||||||||||| ||||| ||| ||||||| ||||| ||||| || || Sbjct 1493 AATGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGATCTGGGGGA 1552 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||| |||||||| || || || || | |||| |||||||| | ||||| Sbjct 1553 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAGGCTTCGACT 1612 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 |||| ||| | ||| ||||| |||| || || || || ||||||||| || Sbjct 1613 TCGAGGGTGATCGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATGCCT 1663 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | || | |||| ||| | || ||||| || || |||||||| || Sbjct 844 CCACCGCGAAGTCGAAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAG 903 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || || |||||||| ||||| ||| ||||||| || |||||||| || || Sbjct 904 AGGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGATCTGGGGGG 963 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || |||||||||||| || || || || | || | |||||| | | ||||| Sbjct 964 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCTTCGACT 1023 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| || | ||| ||||||||||| || || || || ||||||||| Sbjct 1024 TCGAGAGTGATCGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 1071 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | || | |||| ||| | ||||| || || || |||||||| || Sbjct 1205 CCTCCACGGAGTCGAAGGACCAGGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAG 1264 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || || |||||||| ||||| ||| ||||||| || |||||||| || || Sbjct 1265 AGGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGATCTGGGGGG 1324 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||||||||| || || || || | |||| ||| |||| ||| || Sbjct 1325 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCCGAAGCCTCCACT 1384 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| ||| | ||| ||||||||||| || || || || || ||||| Sbjct 1385 TCGAGGGTGATCGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 1431 >seq5063 Length=4177 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || || || || || |||||||| || || ||||| |||||| Sbjct 2604 CACCAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTC 2663 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||| || ||||| ||| |||| | |||||| ||||| || || || || |||||||| Sbjct 2664 GAGTTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGAATTCCTTCCTTGTCCTG 2723 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| |||||| | | ||||| |||| ||| | ||| || Sbjct 2724 GATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGACTTCGAGGGTGATCGTCTT 2783 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 ||||||||| || || || || || |||||| || Sbjct 2784 GCCGGTCAGGGTCTTCACGAAGATTTGCATGCCT 2817 Score = 98.7 bits (108), Expect = 9e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| ||| | ||||||| || ||| Sbjct 1686 ACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGCCCGTCTTCG 1745 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| || |||||||||||||| || || ||||||||||| | Sbjct 1746 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCGGGTGGGATTCCCTCCTTGTCCTGA 1805 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTC 118693 || || || || | ||| | |||||||| | ||||| || Sbjct 1806 ATCTTGGCCTTCACATTTTCAATGGTGTCCGAGGCTTCGACTTC 1849 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || || ||||| || | ||||||| || |||||||| ||||| Sbjct 1928 GTGGACTCCTTCTGGATATTGTAGTCCGAGAGAGTGCGCCCGTCTTCGAGCTGCTTTCCG 1987 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||||| |||||||||||||| || || ||||||||||| Sbjct 1988 GCAAAGATGAGGCGCTGCTGATCGGGTGGGATTCCCTCCTTGTC 2031 >seq7156 Length=22399 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 || ||| |||| || |||||||| || || || || |||||||| ||| || || | Sbjct 9866 CCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATTCCCTCCTTATCTTGGATCTTGGCT 9807 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || || | ||||| |||||| | | ||||||||||| || | || ||||| |||| Sbjct 9806 TTGACATTTTCGATGGTGTCAGAGGCCTCGACCTCGAGAGTGATGGTCTTGCCAGTCAAG 9747 Query 118719 GTTTTTACAAAAATCTGCATGGC 118741 || || || ||||||||||| || Sbjct 9746 GTCTTGACGAAAATCTGCATAGC 9724 >seq6645 Length=21841 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || || ||| |||| || ||||||||||| || || ||||||||||||||| || || Sbjct 8967 TTACCGGCGAAGATAAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCTTGGATCTTG 9026 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | |||| ||||| | | ||||||||||| || | || || || || Sbjct 9027 GCCTTCACATTCTCGATCGTGTCAGAGGCCTCGACCTCGAGCGTGATGGTCTTACCCGTG 9086 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || ||||||||||| Sbjct 9087 AGGGTTTTGACGAAAATCTGCAT 9109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433790692316920