Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2066 100 2e-16 seq4834 98.7 6e-16 seq5063 95.1 8e-15 >seq2066 Length=2850 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| ||||| || | || |||||||| | || || ||||| ||||||||||| || Sbjct 843 TCCACCGCGAAGTCGAAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 902 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || |||| || | |||||| || ||||| ||||| || ||||| || ||| Sbjct 903 GAGGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGATCTGGGGG 962 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | | | || | |||| | |||||| Sbjct 963 GATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCTTCGAC 1022 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || |||||||| || || ||||| ||||||||||| Sbjct 1023 TTCGAGAGTGATCGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1070 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | |||| ||| ||||| ||||||||||| || || || |||| Sbjct 1220 AGGACCAGGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTCT 1279 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| ||||| || ||||| || ||| | | ||||||||| Sbjct 1280 TCGAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGATCTGGGGGGATTCCCTCCTTGTCC 1339 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | ||| | | || || || | ||||| || Sbjct 1340 TGGATCTTGGCCTTGACGTTCTCGATGGTATCCGAAGCCTCCACTTCGAGGGTGATCGTC 1399 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || ||||| ||||| ||||| Sbjct 1400 TTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 1431 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| ||||| || | || |||||||| | ||| ||| || || ||||||||||| || Sbjct 1432 TCCACCGCGAAGTCGGAGAACCAGGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCCGA 1491 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || || | |||||| || ||||| ||||| ||||| || || ||| Sbjct 1492 CAATGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGATCTGGGGG 1551 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| ||||| ||| | | | || | || | | |||||| Sbjct 1552 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAGGCTTCGAC 1611 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || ||||| || | || ||||| ||||||||||| Sbjct 1612 TTCGAGGGTGATCGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 1659 >seq4834 Length=88581 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || |||| ||| | ||| || ||||| |||||||||||||| Sbjct 22318 CCGCCACGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAT 22377 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | ||| |||| || | |||||| || ||||| ||||| || |||||||| || Sbjct 22378 AACGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGAGGG 22437 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||| || ||||| ||| | | | || | ||| | | |||||| Sbjct 22438 ATGCCTTCCTTATCTTGAATCTTCGCCTTCACGTTCTCGATAGTATCCGAGGCTTCGACT 22497 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || || ||||| || || ||||| ||||||||||| Sbjct 22498 TCAAGGGTGATTGTCTTCCCGGTAAGCGTCTTCACGAAGATCTGCAT 22544 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || |||| ||| | |||| || ||||| ||||||||||| || Sbjct 21112 TCCACCACGAAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCTGA 21171 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || |||| |||| || | ||| || || || || ||||| ||||| |||||| || Sbjct 21172 AAGAGTACGGCCGTCCTCAAGCTGTTTTCCGGCAAAGATGAGGCGCTGTTGGTCGGGAGG 21231 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||| || ||||| ||| | | | || | || | | |||||| Sbjct 21232 GATGCCTTCCTTATCTTGAATCTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCTTCGAC 21291 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || |||||||| || || |||||||| ||||| Sbjct 21292 TTCGAGGGTGATGGTCTTTCCGGTGAGCGTCTTGACAAAGATTTGCAT 21339 >seq5063 Length=4177 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | ||| || ||||| |||||||||||||| || ||| | || Sbjct 2226 AGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCC 2285 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||| || ||||| || | ||||| || || ||| | | || ||||| Sbjct 2286 TCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGATCTGGGGGAATTCCTTCTTTGTCC 2345 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | |||| |||| | |||||| || | ||||| || Sbjct 2346 TGGATCTTGGCCTTGACGTTCTCGATCGTGTCGGAGGCTTCGACTTCGAGGGTGATCGTC 2405 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||||||||| ||||||||||| ||||| Sbjct 2406 TTGCCGGTGAGAGTCTTCACAAAGATTTGCAT 2437 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | ||| ||| ||||| ||||||||||| ||||| ||| | || Sbjct 2602 AGCACCAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCC 2661 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||| || ||||| || | ||||| || || ||| | | |||||||| Sbjct 2662 TCGAGTTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGAATTCCTTCCTTGTCC 2721 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | |||| | |||||| || | ||||| || Sbjct 2722 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGACTTCGAGGGTGATCGTC 2781 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || ||||| ||||| ||||| Sbjct 2782 TTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 2813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323042429825600