Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq7237 199 4e-46 seq2592 140 3e-28 seq5063 111 1e-19 seq2066 111 1e-19 seq4834 100 3e-16 >seq7237 Length=102105 Score = 199 bits (220), Expect = 4e-46 Identities = 651/1007 (65%), Gaps = 39/1007 (4%) Strand=Plus/Plus Query 22215 CATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTC 22274 |||| ||||| | |||||| | |||| ||||| ||||||||| || ||||||| Sbjct 84498 CATAGCTCGGTTTGGCCATGTGGATGTTGAGGGACTGGGACTGATCGATGAAGGCTCCTC 84557 Query 22275 GATCGGCGGCCATATTTATCAATGTACGCAT-CGACATTTCCCATACGGTCTTGTACAGT 22333 | || |||||||| | || | ||| | | ||| || ||||| ||||||||||| || Sbjct 84558 GGTCCGCGGCCATCTCGATGA-TGTCCTTCTGCGAGATCTCCCAAACGGTCTTGTAGAGG 84616 Query 22334 TGCCTG-ATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTA-TGA 22391 | |||| | ||| || ||||| ||||| |||||| || || | | ||| | | | Sbjct 84617 T-CCTGCAGCTCCTTGGGGATCGAATCGATGTTCTGGATCGATCCACTCT-GTGAAATTA 84674 Query 22392 TCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAA----TCTTTGACCAGA 22447 || || || | | |||| ||| | | | || || | || || | ||| Sbjct 84675 TCTTGTTCTTCAGATTGTCGTCCCATA----GGTTTCGCTCCACGAGGTCCTTCAGTAGA 84730 Query 22448 TGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTG 22507 ||| | ||||| | || || ||||| || | |||||||| ||| ||||| || ||| Sbjct 84731 TGAGGATTCACGATCTGGAAGTCGCCAGAGAGCACGCGGCGACTGTAGATGTTCGACGTG 84790 Query 22508 AACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGC 22567 |||| || | || || |||||||| || ||||| || ||||| || || ||||| ||| Sbjct 84791 TACGGCTCCATCGACTCGTTGTTTCCTAGGATCTGCGCTGTCGATGCCGTTGGCATGGGC 84850 Query 22568 GCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAG 22627 |||| ||| || ||| | | ||||||||| | || || |||||| | |||| Sbjct 84851 GCCACCAGGAGACTGTTCCGTACGCCGTGCTTCGCGATCTTCTCCTTGAGTGCGGCCCAG 84910 Query 22628 TCCCACAGATCGGA---------CGGCGTCACATTGTC------CCACATATCGTATTGC 22672 |||||| | |||| |||| | ||| || |||||| ||||| ||| Sbjct 84911 TCCCACTGGTCGGTGGGCACGACCGGCTTTCCATCCTCGGTCTTCCACATCTCGTACTGC 84970 Query 22673 AACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCA 22732 | | || | ||| | || ||||| || || ||||| | ||| | | | || Sbjct 84971 AGGATTCCTTGGCTCACTGGCGATCCTTCATAGGTCTCGTAGGTACCGTGCTGCTCCGCC 85030 Query 22733 AGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAAT 22792 || ||||| || |||| || ||| || || ||||||||||| | ||||| Sbjct 85031 AGCTCGCAAGAGGCTTCCAGGGCCGCGTGGTAGATGGTCTCGAAGATCCTTCGGTTCATG 85090 Query 22793 TCGGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCC 22852 | | ||| || || | | || ||||| | || ||| |||||||||| ||| Sbjct 85091 TTGCGGGCTTCGGGACTGGTGAAGGGGTAGCGCATGAGCATGAAGGCGTCCGCCAAGCCC 85150 Query 22853 TGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGA 22912 || || || || || ||||| || | || || || | |||||||||| ||| Sbjct 85151 TGGACTCCGATTCCAATCGGCCGATGCCTCTTGTTGGAGGTCTCGGCCTCGGGCACAGGG 85210 Query 22913 TACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNN 22972 || | |||| ||||| | |||||| ||| || || | | ||||| || Sbjct 85211 TAGTAGTTCGCGTCGATGATCTTGTTCAGGTTCCTCGTGATGACCTTCGTGATCTCGTGG 85270 Query 22973 NNNNNNTCAAAGTCGTAAACGCCCGATTGTACA-----ACAAACTTGTTGACGGCGATCG 23027 | |||| ||| | | || | | || || ||| | ||||| | Sbjct 85271 AGCTTCGCGTAGTC--AAAAGTC---TTCTCCTCGGTGACGAAGCGGTTCAGGGCGACGG 85325 Query 23028 AGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATA 23087 |||| || ||||| ||||| || || || || | ||||| || || ||||| || | Sbjct 85326 AGGCCAGGTTGCACACGGCTACTTCTTCAGGCGAAGAGTACTGGACGATCTCGGTGCAGA 85385 Query 23088 GATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCT 23147 | ||| ||||| ||||| || | || |||||||| || | ||||| | |||| Sbjct 85386 GGTTGGAGCACTTGATCGTCCCGAGGTTCTTCTGGTTGGACTTCTGGTTGCAGGCGTCCT 85445 Query 23148 TGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATC 23194 ||||||||||||| || ||||| || |||| ||||||| || |||| Sbjct 85446 TGTAGAGCATGTAAGGAGTGCCGGTTTCGATCTGCGACGTGACGATC 85492 Score = 136 bits (150), Expect = 4e-27 Identities = 325/488 (67%), Gaps = 10/488 (2%) Strand=Plus/Plus Query 23494 CTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCAC 23553 ||| || || || || |||||||| || || ||||||||||| || | ||||| || | Sbjct 85887 CTTGTTTCCTCCTTGGTCGACGTAGCGAGCGGTGTTGTTGTAGACCCGCAGCATAGGAAT 85946 Query 23554 GAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTG 23613 ||| |||||||| | |||| || || | | || ||||||| | ||| Sbjct 85947 GAGTCCGTTGGAGGTGCCGTTGGTCCCAGCGATGAGAGTTCCGGAGGCTCGAATGCAGTG 86006 Query 23614 AACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTC 23673 || | || || || || ||| | || || || |||| ||||| || ||||| ||| Sbjct 86007 GACATTGAGGCCGATTCCGCCGGCGGACTTGGAGATCAGAGCGCACTGC--CAGAGGGTC 86064 Query 23674 GT--AGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGC 23731 | ||||||| |||||| ||| || | | | || || ||| || || ||| || Sbjct 86065 TTGAAGATGCCGTCGATGGAGTCGTCACTCATGGTGAGCAGGAAGCAGGAGCTCATCTGG 86124 Query 23732 GCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGAC 23791 | ||| || |||| ||| || ||||| ||| || || || | | | ||| Sbjct 86125 GGCTTGCAGGTGCCGGCGTTGAAGAGCGTCGGCGAGGCATGGGTGAACCACCGCTCGGAC 86184 Query 23792 ATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACG 23851 || || ||||| || ||||||||||| | ||||| || ||| || |||| ||| ||| Sbjct 86185 ATGAGGTTGTAGGTTTCGATGGCGGCGTTGATGTCTTCCTTGTGGATTCCGACGGCCACG 86244 Query 23852 CGCATCATCATGTATTGAGGTC---TCTCGACCGTGACGCCGTTAATTTTGAACAGATAT 23908 ||||||| ||| | ||| |||| | ||||| | |||| || |||| || || Sbjct 86245 CGCATCAGCATATGTTGGGGTCGTTCCACGACCTT---CCCGTCGATCTTGAGGAGGTAG 86301 Query 23909 GAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATG 23968 || || | || || || || || || ||| ||||| ||||| || |||| || ||| Sbjct 86302 GAGCGCTCCAGGGTCTTGAAGCCGAAGTAGGTGTAGTTGAAGTCGCGGTCGTAGACGATG 86361 Query 23969 GCCGAATT 23976 ||||| || Sbjct 86362 GCCGAGTT 86369 >seq2592 Length=18905 Score = 140 bits (154), Expect = 3e-28 Identities = 218/312 (70%), Gaps = 0/312 (0%) Strand=Plus/Minus Query 57978 ATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGG 58037 ||||| ||||||||||| ||||| || ||||| || || ||| || || || || ||| Sbjct 15193 ATCGCCTTCGCCGCCGTGGAAGGCATCTTCTTCTCCGGATCCTTCGCCGCCATCTTCTGG 15134 Query 58038 ATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGAC 58097 | ||||| |||||||||||||||||||| || |||||||| | || || || ||| Sbjct 15133 CTCAAGAAGCGCGGCCTGATGCCCGGCCTCACCCACAGCAACGAACTCATCTCCCGGGAC 15074 Query 58098 GAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACG 58157 || || ||||| || || || ||||| |||||| || | | | || || | Sbjct 15073 GAAGGCCTCCACCGCGACTTCGCCTGCCTCATGTACAAGTACCTGGAGAGCAAGCCCAGC 15014 Query 58158 CGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACC 58217 | | | | || || || ||| |||||| ||| |||||| | |||| | || Sbjct 15013 CAGAAGCAGGTCAACGAGATCATCCGCGAGGCCGTCCAGATCGAGCAGGAGTACCTGACA 14954 Query 58218 GAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAG 58277 ||||||||||| |||| |||| |||| |||||| | ||||| ||||||| ||| Sbjct 14953 GAAGCCCTACCCGTGGACATGATCGGCATGAACTGCCGCCTAATGTCCCAGTACATAGAG 14894 Query 58278 TTTGTTGCCGAC 58289 | || |||||| Sbjct 14893 TACGTGGCCGAC 14882 >seq5063 Length=4177 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| ||||| ||||| ||||||||| |||| || ||| | || Sbjct 2814 CATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACGATCACCCTCGAAGTCGAAGCCTC 2755 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | ||||| | || |||||||||||| | || || || || Sbjct 2754 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCA 2695 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||| || || || | || || || || || || || Sbjct 2694 ACAGCGTTTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTGTCGGACTACAA 2635 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||| || || |||||||||||||| ||||| || |||| Sbjct 2634 CATCCAGAAGGAATCGACTCTTCACCTGGTGCTCCGACT 2596 >seq2066 Length=2850 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| ||||| ||||||||| |||| || ||| | || Sbjct 1660 CATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACGATCACCCTCGAAGTCGAAGCCTC 1601 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| | || ||||||||||||| | || || || || Sbjct 1600 GGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 1541 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||| || || ||||| || || ||| | || || || || || || || Sbjct 1540 ACAGCGCCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACATTGTCGGACTACAA 1481 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||| ||||| |||||||||||||| ||||| || |||| Sbjct 1480 CATCCAAAAGGAATCGACTCTTCACCTGGTTCTCCGACT 1442 >seq4834 Length=88581 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 31186 ATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA 31245 |||| |||||| || ||||| || ||||| || || || || |||||| | || ||||| Sbjct 23073 ATCAGTCATGCAGATCTTCGTCAAAACTCTTACCGGAAAGACCATCACCCTTGAGGTTGA 23014 Query 31246 ACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305 ||||||||| |||||| ||||| | || ||||||||||||| | || || Sbjct 23013 GGCGTCCGACACCATCGAAAACGTCAAGGCTAAGATTCAGGACAAGGAAGGCATCCCTCC 22954 Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAA 31335 |||||||||||| || || ||||| || || Sbjct 22953 CGACCAGCAGCGCCTGATCTTCGCCGGTAA 22924 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || || || || |||||| |||| || ||| | || Sbjct 21614 ATGCAGATCTTTGTCAAGACTCTTACCGGGAAGACCATCACCCTCGAAGTCGAAGCCTCG 21555 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||| ||||||||| | || ||||||||| Sbjct 21554 GACACAATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCCGACCAG 21495 Query 31313 CAGCGTCTAATATTCGCTGG 31332 ||||| || || |||||||| Sbjct 21494 CAGCGCCTCATCTTCGCTGG 21475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445724553679200