Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq7237 199 4e-46
seq2592 140 3e-28
seq5063 111 1e-19
seq2066 111 1e-19
seq4834 100 3e-16
>seq7237
Length=102105
Score = 199 bits (220), Expect = 4e-46
Identities = 651/1007 (65%), Gaps = 39/1007 (4%)
Strand=Plus/Plus
Query 22215 CATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTC 22274
|||| ||||| | |||||| | |||| ||||| ||||||||| || |||||||
Sbjct 84498 CATAGCTCGGTTTGGCCATGTGGATGTTGAGGGACTGGGACTGATCGATGAAGGCTCCTC 84557
Query 22275 GATCGGCGGCCATATTTATCAATGTACGCAT-CGACATTTCCCATACGGTCTTGTACAGT 22333
| || |||||||| | || | ||| | | ||| || ||||| ||||||||||| ||
Sbjct 84558 GGTCCGCGGCCATCTCGATGA-TGTCCTTCTGCGAGATCTCCCAAACGGTCTTGTAGAGG 84616
Query 22334 TGCCTG-ATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTA-TGA 22391
| |||| | ||| || ||||| ||||| |||||| || || | | ||| | | |
Sbjct 84617 T-CCTGCAGCTCCTTGGGGATCGAATCGATGTTCTGGATCGATCCACTCT-GTGAAATTA 84674
Query 22392 TCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAA----TCTTTGACCAGA 22447
|| || || | | |||| ||| | | | || || | || || | |||
Sbjct 84675 TCTTGTTCTTCAGATTGTCGTCCCATA----GGTTTCGCTCCACGAGGTCCTTCAGTAGA 84730
Query 22448 TGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTG 22507
||| | ||||| | || || ||||| || | |||||||| ||| ||||| || |||
Sbjct 84731 TGAGGATTCACGATCTGGAAGTCGCCAGAGAGCACGCGGCGACTGTAGATGTTCGACGTG 84790
Query 22508 AACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGC 22567
|||| || | || || |||||||| || ||||| || ||||| || || ||||| |||
Sbjct 84791 TACGGCTCCATCGACTCGTTGTTTCCTAGGATCTGCGCTGTCGATGCCGTTGGCATGGGC 84850
Query 22568 GCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAG 22627
|||| ||| || ||| | | ||||||||| | || || |||||| | ||||
Sbjct 84851 GCCACCAGGAGACTGTTCCGTACGCCGTGCTTCGCGATCTTCTCCTTGAGTGCGGCCCAG 84910
Query 22628 TCCCACAGATCGGA---------CGGCGTCACATTGTC------CCACATATCGTATTGC 22672
|||||| | |||| |||| | ||| || |||||| ||||| |||
Sbjct 84911 TCCCACTGGTCGGTGGGCACGACCGGCTTTCCATCCTCGGTCTTCCACATCTCGTACTGC 84970
Query 22673 AACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCA 22732
| | || | ||| | || ||||| || || ||||| | ||| | | | ||
Sbjct 84971 AGGATTCCTTGGCTCACTGGCGATCCTTCATAGGTCTCGTAGGTACCGTGCTGCTCCGCC 85030
Query 22733 AGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAAT 22792
|| ||||| || |||| || ||| || || ||||||||||| | |||||
Sbjct 85031 AGCTCGCAAGAGGCTTCCAGGGCCGCGTGGTAGATGGTCTCGAAGATCCTTCGGTTCATG 85090
Query 22793 TCGGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCC 22852
| | ||| || || | | || ||||| | || ||| |||||||||| |||
Sbjct 85091 TTGCGGGCTTCGGGACTGGTGAAGGGGTAGCGCATGAGCATGAAGGCGTCCGCCAAGCCC 85150
Query 22853 TGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGA 22912
|| || || || || ||||| || | || || || | |||||||||| |||
Sbjct 85151 TGGACTCCGATTCCAATCGGCCGATGCCTCTTGTTGGAGGTCTCGGCCTCGGGCACAGGG 85210
Query 22913 TACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNN 22972
|| | |||| ||||| | |||||| ||| || || | | ||||| ||
Sbjct 85211 TAGTAGTTCGCGTCGATGATCTTGTTCAGGTTCCTCGTGATGACCTTCGTGATCTCGTGG 85270
Query 22973 NNNNNNTCAAAGTCGTAAACGCCCGATTGTACA-----ACAAACTTGTTGACGGCGATCG 23027
| |||| ||| | | || | | || || ||| | ||||| |
Sbjct 85271 AGCTTCGCGTAGTC--AAAAGTC---TTCTCCTCGGTGACGAAGCGGTTCAGGGCGACGG 85325
Query 23028 AGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATA 23087
|||| || ||||| ||||| || || || || | ||||| || || ||||| || |
Sbjct 85326 AGGCCAGGTTGCACACGGCTACTTCTTCAGGCGAAGAGTACTGGACGATCTCGGTGCAGA 85385
Query 23088 GATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCT 23147
| ||| ||||| ||||| || | || |||||||| || | ||||| | ||||
Sbjct 85386 GGTTGGAGCACTTGATCGTCCCGAGGTTCTTCTGGTTGGACTTCTGGTTGCAGGCGTCCT 85445
Query 23148 TGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATC 23194
||||||||||||| || ||||| || |||| ||||||| || ||||
Sbjct 85446 TGTAGAGCATGTAAGGAGTGCCGGTTTCGATCTGCGACGTGACGATC 85492
Score = 136 bits (150), Expect = 4e-27
Identities = 325/488 (67%), Gaps = 10/488 (2%)
Strand=Plus/Plus
Query 23494 CTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCAC 23553
||| || || || || |||||||| || || ||||||||||| || | ||||| || |
Sbjct 85887 CTTGTTTCCTCCTTGGTCGACGTAGCGAGCGGTGTTGTTGTAGACCCGCAGCATAGGAAT 85946
Query 23554 GAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTG 23613
||| |||||||| | |||| || || | | || ||||||| | |||
Sbjct 85947 GAGTCCGTTGGAGGTGCCGTTGGTCCCAGCGATGAGAGTTCCGGAGGCTCGAATGCAGTG 86006
Query 23614 AACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTC 23673
|| | || || || || ||| | || || || |||| ||||| || ||||| |||
Sbjct 86007 GACATTGAGGCCGATTCCGCCGGCGGACTTGGAGATCAGAGCGCACTGC--CAGAGGGTC 86064
Query 23674 GT--AGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGC 23731
| ||||||| |||||| ||| || | | | || || ||| || || ||| ||
Sbjct 86065 TTGAAGATGCCGTCGATGGAGTCGTCACTCATGGTGAGCAGGAAGCAGGAGCTCATCTGG 86124
Query 23732 GCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGAC 23791
| ||| || |||| ||| || ||||| ||| || || || | | | |||
Sbjct 86125 GGCTTGCAGGTGCCGGCGTTGAAGAGCGTCGGCGAGGCATGGGTGAACCACCGCTCGGAC 86184
Query 23792 ATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACG 23851
|| || ||||| || ||||||||||| | ||||| || ||| || |||| ||| |||
Sbjct 86185 ATGAGGTTGTAGGTTTCGATGGCGGCGTTGATGTCTTCCTTGTGGATTCCGACGGCCACG 86244
Query 23852 CGCATCATCATGTATTGAGGTC---TCTCGACCGTGACGCCGTTAATTTTGAACAGATAT 23908
||||||| ||| | ||| |||| | ||||| | |||| || |||| || ||
Sbjct 86245 CGCATCAGCATATGTTGGGGTCGTTCCACGACCTT---CCCGTCGATCTTGAGGAGGTAG 86301
Query 23909 GAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATG 23968
|| || | || || || || || || ||| ||||| ||||| || |||| || |||
Sbjct 86302 GAGCGCTCCAGGGTCTTGAAGCCGAAGTAGGTGTAGTTGAAGTCGCGGTCGTAGACGATG 86361
Query 23969 GCCGAATT 23976
||||| ||
Sbjct 86362 GCCGAGTT 86369
>seq2592
Length=18905
Score = 140 bits (154), Expect = 3e-28
Identities = 218/312 (70%), Gaps = 0/312 (0%)
Strand=Plus/Minus
Query 57978 ATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGG 58037
||||| ||||||||||| ||||| || ||||| || || ||| || || || || |||
Sbjct 15193 ATCGCCTTCGCCGCCGTGGAAGGCATCTTCTTCTCCGGATCCTTCGCCGCCATCTTCTGG 15134
Query 58038 ATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGAC 58097
| ||||| |||||||||||||||||||| || |||||||| | || || || |||
Sbjct 15133 CTCAAGAAGCGCGGCCTGATGCCCGGCCTCACCCACAGCAACGAACTCATCTCCCGGGAC 15074
Query 58098 GAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACG 58157
|| || ||||| || || || ||||| |||||| || | | | || || |
Sbjct 15073 GAAGGCCTCCACCGCGACTTCGCCTGCCTCATGTACAAGTACCTGGAGAGCAAGCCCAGC 15014
Query 58158 CGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACC 58217
| | | | || || || ||| |||||| ||| |||||| | |||| | ||
Sbjct 15013 CAGAAGCAGGTCAACGAGATCATCCGCGAGGCCGTCCAGATCGAGCAGGAGTACCTGACA 14954
Query 58218 GAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAG 58277
||||||||||| |||| |||| |||| |||||| | ||||| ||||||| |||
Sbjct 14953 GAAGCCCTACCCGTGGACATGATCGGCATGAACTGCCGCCTAATGTCCCAGTACATAGAG 14894
Query 58278 TTTGTTGCCGAC 58289
| || ||||||
Sbjct 14893 TACGTGGCCGAC 14882
>seq5063
Length=4177
Score = 111 bits (122), Expect = 1e-19
Identities = 156/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
||||||||| ||||| ||||| ||||| ||||| ||||||||| |||| || ||| | ||
Sbjct 2814 CATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACGATCACCCTCGAAGTCGAAGCCTC 2755
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||||| |||| | ||||| | || |||||||||||| | || || || ||
Sbjct 2754 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCA 2695
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| | || ||||| || || || | || || || || || || ||
Sbjct 2694 ACAGCGTTTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTGTCGGACTACAA 2635
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
||| || || |||||||||||||| ||||| || ||||
Sbjct 2634 CATCCAGAAGGAATCGACTCTTCACCTGGTGCTCCGACT 2596
>seq2066
Length=2850
Score = 111 bits (122), Expect = 1e-19
Identities = 156/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| |||| ||||| ||||||||| |||| || ||| | ||
Sbjct 1660 CATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACGATCACCCTCGAAGTCGAAGCCTC 1601
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | ||||| | || ||||||||||||| | || || || ||
Sbjct 1600 GGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 1541
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||||| || || ||||| || || ||| | || || || || || || ||
Sbjct 1540 ACAGCGCCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACATTGTCGGACTACAA 1481
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
||| ||||| |||||||||||||| ||||| || ||||
Sbjct 1480 CATCCAAAAGGAATCGACTCTTCACCTGGTTCTCCGACT 1442
>seq4834
Length=88581
Score = 100 bits (110), Expect = 3e-16
Identities = 112/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 31186 ATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA 31245
|||| |||||| || ||||| || ||||| || || || || |||||| | || |||||
Sbjct 23073 ATCAGTCATGCAGATCTTCGTCAAAACTCTTACCGGAAAGACCATCACCCTTGAGGTTGA 23014
Query 31246 ACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305
||||||||| |||||| ||||| | || ||||||||||||| | || ||
Sbjct 23013 GGCGTCCGACACCATCGAAAACGTCAAGGCTAAGATTCAGGACAAGGAAGGCATCCCTCC 22954
Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAA 31335
|||||||||||| || || ||||| || ||
Sbjct 22953 CGACCAGCAGCGCCTGATCTTCGCCGGTAA 22924
Score = 86.0 bits (94), Expect = 6e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || |||||||| || || || || |||||| |||| || ||| | ||
Sbjct 21614 ATGCAGATCTTTGTCAAGACTCTTACCGGGAAGACCATCACCCTCGAAGTCGAAGCCTCG 21555
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| | || ||| ||||||||| | || |||||||||
Sbjct 21554 GACACAATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCCGACCAG 21495
Query 31313 CAGCGTCTAATATTCGCTGG 31332
||||| || || ||||||||
Sbjct 21494 CAGCGCCTCATCTTCGCTGG 21475
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445724553679200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |