Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq5063 89.7 5e-13
seq2066 84.2 2e-11
>seq5063
Length=4177
Score = 89.7 bits (98), Expect = 5e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | ||| | ||||| || ||||| || || ||||| || |||
Sbjct 1668 CCACCGCGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1727
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| | |||||||||||| || |||||| ||||||| || ||||||||||| ||
Sbjct 1728 AGAGTGCGCCCGTCTTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCGGGTGGG 1787
Query 139658 ATGCCTTCTTTGTC 139671
|| || || |||||
Sbjct 1788 ATTCCCTCCTTGTC 1801
>seq2066
Length=2850
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620
||||| ||||| || || || ||||| || || | || | ||||||||||||
Sbjct 1228 GTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTCTTCGAGCTG 1287
Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680
|| || || |||| || ||||||||||| || || || || || ||||| ||| ||
Sbjct 1288 CTTTCCGGCGAAGATGAGGCGTTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTT 1347
Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740
|| | | || | || || | | |||||| || | ||| | ||||||||||||
Sbjct 1348 GGCCTTGACGTTCTCGATGGTATCCGAAGCCTCCACTTCGAGGGTGATCGTCTTGCCGGT 1407
Query 139741 CAACGTTTTTACGAATATTTGCAT 139764
|| || || ||||| ||||||||
Sbjct 1408 CAGGGTCTTCACGAAGATTTGCAT 1431
Score = 82.4 bits (90), Expect = 8e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614
||| | ||||| || ||||| || || ||||| || || | || | ||||||
Sbjct 861 AACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTCTTC 920
Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674
|||||| || || || |||| || ||||||||||| || || || || || |||||
Sbjct 921 GAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGATCTGGGGGGATTCCCTCCTTGTCTTG 980
Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734
||| || || | | || | ||||||| || || || || | || | ||||||
Sbjct 981 GATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCTTCGACTTCGAGAGTGATCGTCTT 1040
Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||||||| || || ||||| || |||||
Sbjct 1041 GCCGGTCAGGGTCTTCACGAAGATCTGCAT 1070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496017431992000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |