Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq2592 179 5e-40
seq545 127 3e-24
>seq2592
Length=18905
Score = 179 bits (198), Expect = 5e-40
Identities = 239/332 (72%), Gaps = 9/332 (3%)
Strand=Plus/Minus
Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492
|| ||||||||||| || ||||||||||| || || || || |||||||| ||||||
Sbjct 15190 GCCTTCGCCGCCGTGGAAGGCATCTTCTTCTCCGGATCCTTCGCCGCCATCTTCTGGCTC 15131
Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552
||||||||||| || |||||||| || || ||||| ||||| | || || || |||||
Sbjct 15130 AAGAAGCGCGGCCTGATGCCCGGCCTCACCCACAGCAACGAACTCATCTCCCGGGACGAA 15071
Query 125553 GGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGA 125612
||||| ||| | ||||| ||| || ||| ||| || ||| ||| |||
Sbjct 15070 GGCCTCCACCGCGACTTCGCCTGCCTCATGT---ACAAGTACCTG------GAGAGCAAG 15020
Query 125613 TCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTT 125672
||||| | | |||||| | | || | ||| ||||| ||| || || ||||
Sbjct 15019 CCCAGCCAGAAGCAGGTCAACGAGATCATCCGCGAGGCCGTCCAGATCGAGCAGGAGTAC 14960
Query 125673 CTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTAC 125732
|| || ||| ||||||| || |||||| |||||||||||| ||||||| | |||||
Sbjct 14959 CTGACAGAAGCCCTACCCGTGGACATGATCGGCATGAACTGCCGCCTAATGTCCCAGTAC 14900
Query 125733 ATAGAGTTTGTGGCAGATCGTCTACTGTACGA 125764
||||||| ||||| || | ||||| ||||
Sbjct 14899 ATAGAGTACGTGGCCGACCACCTACTTAACGA 14868
>seq545
Length=59741
Score = 127 bits (140), Expect = 3e-24
Identities = 234/343 (68%), Gaps = 0/343 (0%)
Strand=Plus/Minus
Query 127101 TTTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGT 127160
||| | ||| ||||||| | |||| || || | ||||| |||||| || || |||||
Sbjct 13136 TTTTCTGTAGAAGATGAGGGCTCCTCGGGGTCCACGGAGAGACTTGTGAGTCGTCGTGGT 13077
Query 127161 CACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAAT 127220
|| ||||| ||||| ||||| || | |||| || |||| | || || ||
Sbjct 13076 GACGATGTCCGCGTACTCGAAGGGAGACGGGACGACTCCTCCAGCAACGAGACCGGCGAT 13017
Query 127221 GTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCT 127280
||| || || |||||||||| ||| |||| |||||| |||| ||||||||
Sbjct 13016 GTGAGCCATGTCGGCCATCAAGTAGGCGCCGCACTTATCGGCGATCTTGCGGAATCGGGC 12957
Query 127281 ATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAG 127340
||||| | | | || | ||||| || |||| || | ||| | | |||| ||| ||
Sbjct 12956 GTAGTCGAGGTGGCGGGCGTAGCAGCTCATGCCAGCGACGATGACCTTAGGGCGGAAGAG 12897
Query 127341 ATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTA 127400
| || ||| |||| | | | ||||||| ||| || |||| || | |||||||||
Sbjct 12896 CATAGCGTTCTGCTCAAGCTGGTCGTAGTCGATGAGGCCGGTCTTGGGGTTCACCTTGTA 12837
Query 127401 CGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTTGCGG 127443
|||||| ||||| |||| || || |||| || ||||||
Sbjct 12836 CGGCATCGACTCGAAGAAGATCGAGGTTACGGAGACCTTGCGG 12794
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740989633067600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |