Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq2257 196 7e-45 >seq2257 Length=8409 Score = 196 bits (216), Expect = 7e-45 Identities = 311/446 (70%), Gaps = 0/446 (0%) Strand=Plus/Minus Query 43580 AAGAGCGTGATATAGTCGTCATTTTTCAGACGCTCGAAAAACAGCTTGTTGATTTGGATA 43639 || |||||||||| | | | || |||| |||| | | | || |||||| || | | Sbjct 5930 AACAGCGTGATATGGCTGCCCTTGATCAGGCGCTGGTACAGCAAGCGGTTGATCTGAACA 5871 Query 43640 CCGTAGTCAAGCTGGCGAATTCGATTTTCTTCCACGCCCTTGTTGTTTTTCAGAACAAGG 43699 |||||||| | || ||||| || ||||||||||| || |||||| |||||||| || Sbjct 5870 CCGTAGTCCAAGTGACGAATACGGTTTTCTTCCACACCACGGTTGTTCTTCAGAACCAGC 5811 Query 43700 ATTTTTTCAACTTCAAGATGCCACATTGGATAGTAAAGAGTAGCAGCGCCACCGCGTACA 43759 | | |||| ||||| || |||||||| || ||| | | || || || ||||| || || Sbjct 5810 AGTGTTTCCACTTCCAGGTGCCACATGGGGTAGAACAAGGTTGCCGCACCACCACGCACG 5751 Query 43760 CCACCCTGTGAGCAACTTTTTACCGCAGTCTGGAAATATTTCCAGAACGGAATAATACCA 43819 || || || ||||| || ||||||| |||||| || ||||||| | ||| Sbjct 5750 CCGCCTTGCGAGCAGGACTTCACCGCAGCCTGGAACATCTTGAAGAACGGCAGGCAACCC 5691 Query 43820 GTGTGGCGAACTTCACCACTTCGAATGCGAGAACCTTCGGCACGAATAGCGCCACCGTTG 43879 ||||| | ||||||||| ||||| ||| |||| ||||| |||||| ||| Sbjct 5690 GTGTGTTGTGCTTCACCACCACGAATTTCGCTGCCTACGGCGCGAATGCGGCCACCATTG 5631 Query 43880 ATACCGATACCAGCGCGTTTGCTAATATAGTCAACGATTGAACTTGCGGTAGCGTTAATG 43939 ||||||||||| || || | | || ||| || | || | || || || ||| Sbjct 5630 ATACCGATACCGGCACGCTGTGACACGTAACGAACAATGGCGCTGGTCGTGGCATTGATG 5571 Query 43940 CTATCGAGTTCGTCGCCGCTTTCGATCTTCACGCATGAGCTAAACTGGCGAGTCGGGGTT 43999 || || || |||| | | ||||||| |||||| ||||| ||||||||||| || || Sbjct 5570 CTGTCCAGGCTGTCGTCACATTCGATCAGCACGCAAGAGCTGAACTGGCGAGTGGGTGTG 5511 Query 44000 CGAACACCAGCAAGAATTGGCGTCGG 44025 || || ||||| | || ||||| || Sbjct 5510 CGCACGCCAGCCATGATGGGCGTGGG 5485 Score = 89.7 bits (98), Expect = 8e-13 Identities = 213/314 (68%), Gaps = 6/314 (2%) Strand=Plus/Minus Query 41063 ATTCCGCATGATGTGGGTATAAGAACGGCTATGAATTGTCTCACTGAAACTCCATGTGGT 41122 ||| || |||||||| || || || || ||||| ||||| |||| ||| || Sbjct 7545 ATTGCGAATGATGTGCGTGTACGAGCGCGAGTGAATCGTCTCGGAGAAAGCCCAGGTTTC 7486 Query 41123 GATCCAAGTTTCAAGCGC-GACATCAGATACGATTGGCAAGAATACCAAGTTAGGTGCGC 41181 ||||| ||||| ||| | | ||| ||||| | |||| ||| ||| ||| || || Sbjct 7485 AATCCAGGTTTCCAGCTCCGGAATC-GATACCAAAGGCAGGAAGGCCACGTTGGGGCTGC 7427 Query 41182 GACCTTGTACCGAGTCAAGCAGACTTTGATATTTCAAGTTT-TGAGTGAAAACATGTTGT 41240 | || || | || || |||| | ||||| |||| || ||| |||||| || | | Sbjct 7426 GGCCCTGGATGGAATCCAGCAAGGTCTGATACTTCAGATTGCTGA-TGAAAATGTGCTTT 7368 Query 41241 TCGGCTTCACTCAGTTGATTATAGTCGATTGCATCCTTAGACAAATCCACTTCTTCGGGA 41300 ||| ||| ||| | | ||||||||| |||| | | |||||||| || ||| Sbjct 7367 TCGTGGTCAGGCAGGTTCTGATAGTCGATCCGGTCCTGGGTAATGTCCACTTCCTCCGGA 7308 Query 41301 CGCCAGAAAAATGAAAGTTGCTTTTCTGTAAGCTTATCAATTGCCGGAT-GTTTTACTGT 41359 |||||||| || || | |||||||| | ||||| |||| ||||| |||| ||| Sbjct 7307 CGCCAGAAGAAGGACAACTGCTTTTCAATCAGCTTTTCAAAAATCGGATATTTTTGCTG- 7249 Query 41360 TTCATATCGAGCCA 41373 || || ||||||| Sbjct 7248 GTCGTAGCGAGCCA 7235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 746150748522400