Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_005260.1
Length=233234
Score E
Sequences producing significant alignments: (Bits) Value
seq2257 196 7e-45
>seq2257
Length=8409
Score = 196 bits (216), Expect = 7e-45
Identities = 311/446 (70%), Gaps = 0/446 (0%)
Strand=Plus/Minus
Query 43580 AAGAGCGTGATATAGTCGTCATTTTTCAGACGCTCGAAAAACAGCTTGTTGATTTGGATA 43639
|| |||||||||| | | | || |||| |||| | | | || |||||| || | |
Sbjct 5930 AACAGCGTGATATGGCTGCCCTTGATCAGGCGCTGGTACAGCAAGCGGTTGATCTGAACA 5871
Query 43640 CCGTAGTCAAGCTGGCGAATTCGATTTTCTTCCACGCCCTTGTTGTTTTTCAGAACAAGG 43699
|||||||| | || ||||| || ||||||||||| || |||||| |||||||| ||
Sbjct 5870 CCGTAGTCCAAGTGACGAATACGGTTTTCTTCCACACCACGGTTGTTCTTCAGAACCAGC 5811
Query 43700 ATTTTTTCAACTTCAAGATGCCACATTGGATAGTAAAGAGTAGCAGCGCCACCGCGTACA 43759
| | |||| ||||| || |||||||| || ||| | | || || || ||||| || ||
Sbjct 5810 AGTGTTTCCACTTCCAGGTGCCACATGGGGTAGAACAAGGTTGCCGCACCACCACGCACG 5751
Query 43760 CCACCCTGTGAGCAACTTTTTACCGCAGTCTGGAAATATTTCCAGAACGGAATAATACCA 43819
|| || || ||||| || ||||||| |||||| || ||||||| | |||
Sbjct 5750 CCGCCTTGCGAGCAGGACTTCACCGCAGCCTGGAACATCTTGAAGAACGGCAGGCAACCC 5691
Query 43820 GTGTGGCGAACTTCACCACTTCGAATGCGAGAACCTTCGGCACGAATAGCGCCACCGTTG 43879
||||| | ||||||||| ||||| ||| |||| ||||| |||||| |||
Sbjct 5690 GTGTGTTGTGCTTCACCACCACGAATTTCGCTGCCTACGGCGCGAATGCGGCCACCATTG 5631
Query 43880 ATACCGATACCAGCGCGTTTGCTAATATAGTCAACGATTGAACTTGCGGTAGCGTTAATG 43939
||||||||||| || || | | || ||| || | || | || || || |||
Sbjct 5630 ATACCGATACCGGCACGCTGTGACACGTAACGAACAATGGCGCTGGTCGTGGCATTGATG 5571
Query 43940 CTATCGAGTTCGTCGCCGCTTTCGATCTTCACGCATGAGCTAAACTGGCGAGTCGGGGTT 43999
|| || || |||| | | ||||||| |||||| ||||| ||||||||||| || ||
Sbjct 5570 CTGTCCAGGCTGTCGTCACATTCGATCAGCACGCAAGAGCTGAACTGGCGAGTGGGTGTG 5511
Query 44000 CGAACACCAGCAAGAATTGGCGTCGG 44025
|| || ||||| | || ||||| ||
Sbjct 5510 CGCACGCCAGCCATGATGGGCGTGGG 5485
Score = 89.7 bits (98), Expect = 8e-13
Identities = 213/314 (68%), Gaps = 6/314 (2%)
Strand=Plus/Minus
Query 41063 ATTCCGCATGATGTGGGTATAAGAACGGCTATGAATTGTCTCACTGAAACTCCATGTGGT 41122
||| || |||||||| || || || || ||||| ||||| |||| ||| ||
Sbjct 7545 ATTGCGAATGATGTGCGTGTACGAGCGCGAGTGAATCGTCTCGGAGAAAGCCCAGGTTTC 7486
Query 41123 GATCCAAGTTTCAAGCGC-GACATCAGATACGATTGGCAAGAATACCAAGTTAGGTGCGC 41181
||||| ||||| ||| | | ||| ||||| | |||| ||| ||| ||| || ||
Sbjct 7485 AATCCAGGTTTCCAGCTCCGGAATC-GATACCAAAGGCAGGAAGGCCACGTTGGGGCTGC 7427
Query 41182 GACCTTGTACCGAGTCAAGCAGACTTTGATATTTCAAGTTT-TGAGTGAAAACATGTTGT 41240
| || || | || || |||| | ||||| |||| || ||| |||||| || | |
Sbjct 7426 GGCCCTGGATGGAATCCAGCAAGGTCTGATACTTCAGATTGCTGA-TGAAAATGTGCTTT 7368
Query 41241 TCGGCTTCACTCAGTTGATTATAGTCGATTGCATCCTTAGACAAATCCACTTCTTCGGGA 41300
||| ||| ||| | | ||||||||| |||| | | |||||||| || |||
Sbjct 7367 TCGTGGTCAGGCAGGTTCTGATAGTCGATCCGGTCCTGGGTAATGTCCACTTCCTCCGGA 7308
Query 41301 CGCCAGAAAAATGAAAGTTGCTTTTCTGTAAGCTTATCAATTGCCGGAT-GTTTTACTGT 41359
|||||||| || || | |||||||| | ||||| |||| ||||| |||| |||
Sbjct 7307 CGCCAGAAGAAGGACAACTGCTTTTCAATCAGCTTTTCAAAAATCGGATATTTTTGCTG- 7249
Query 41360 TTCATATCGAGCCA 41373
|| || |||||||
Sbjct 7248 GTCGTAGCGAGCCA 7235
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 746150748522400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |