Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5063 120 7e-22 seq471 102 2e-16 seq4834 91.5 3e-13 >seq5063 Length=4177 Score = 120 bits (132), Expect = 7e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | ||||| || ||||| || || ||||| || ||||| | || || Sbjct 2225 AAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATC 2284 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || ||||| ||||| || || || | | ||||||||| || || ||||||||||| || Sbjct 2285 CTCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGATCTGGGGGAATTCCTTCTTTGTC 2344 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||| || || || || || | || ||| | ||| || || || || || || Sbjct 2345 CTGGATCTTGGCCTTGACGTTCTCGATCGTGTCGGAGGCTTCGACTTCGAGGGTGATCGT 2404 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||| || || || || || ||||| || |||||| Sbjct 2405 CTTGCCGGTGAGAGTCTTCACAAAGATTTGCATT 2438 Score = 113 bits (124), Expect = 1e-19 Identities = 129/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || ||||| | |||||||| || || || ||| Sbjct 1698 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGCCCGTCTTCGAGCTGCTTGCCA 1757 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| ||||| || || ||||| || || ||||||||||| || || Sbjct 1758 GCAAAGATCAGGCGCTGCTGATCGGGTGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTC 1817 Query 104483 ACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACC 104532 |||||||| | ||| || | ||| ||| || || || || || ||||| || Sbjct 1818 ACATTTTCAATGGTGTC-CGAGGCTTCGACTTCAAGAGTGATGGTCTTTCC 1867 >seq471 Length=2147 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || ||||| || || | |||||||||||| || ||||| || |||||||| || || Sbjct 1950 TTACCGGCAAAGATCAGGCGCTGTTGATCAGGTGGGATTCCCTCCTTATCCTGGATTTTG 2009 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || |||||||| | |||||| || ||| || || || || || ||||| || || Sbjct 2010 GCCTTCACATTTTCGATGGTATCCGAAGCTTCGACTTCAAGAGTGATGGTCTTTCCTGTG 2069 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || || || || || ||||||||| Sbjct 2070 AGCGTCTTGACGAAGATCTGCATT 2093 >seq4834 Length=88581 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || || || || || | ||| || || ||||| || ||||| || ||||||||||| Sbjct 22924 TTACCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGAATCTTA 22983 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || || ||||| | ||| ||| | || ||||| || || || ||||| || ||| Sbjct 22984 GCCTTGACGTTTTCGATGGTGTCGGACGCCTCAACCTCAAGGGTGATGGTCTTTCCGGTA 23043 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || |||||||| Sbjct 23044 AGAGTTTTGACGAAGATCTGCAT 23066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151287610287080