Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq5063 120 7e-22
seq471 102 2e-16
seq4834 91.5 3e-13
>seq5063
Length=4177
Score = 120 bits (132), Expect = 7e-22
Identities = 155/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || || || | ||||| || ||||| || || ||||| || ||||| | || ||
Sbjct 2225 AAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATC 2284
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| ||||| ||||| || || || | | ||||||||| || || ||||||||||| ||
Sbjct 2285 CTCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGATCTGGGGGAATTCCTTCTTTGTC 2344
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||| ||||| || || || || || | || ||| | ||| || || || || || ||
Sbjct 2345 CTGGATCTTGGCCTTGACGTTCTCGATCGTGTCGGAGGCTTCGACTTCGAGGGTGATCGT 2404
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
||| || || || || || ||||| || ||||||
Sbjct 2405 CTTGCCGGTGAGAGTCTTCACAAAGATTTGCATT 2438
Score = 113 bits (124), Expect = 1e-19
Identities = 129/171 (75%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || ||||| || ||||| | |||||||| || || || |||
Sbjct 1698 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGCCCGTCTTCGAGCTGCTTGCCA 1757
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || || | ||| ||||| || || ||||| || || ||||||||||| || ||
Sbjct 1758 GCAAAGATCAGGCGCTGCTGATCGGGTGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTC 1817
Query 104483 ACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACC 104532
|||||||| | ||| || | ||| ||| || || || || || ||||| ||
Sbjct 1818 ACATTTTCAATGGTGTC-CGAGGCTTCGACTTCAAGAGTGATGGTCTTTCC 1867
>seq471
Length=2147
Score = 102 bits (112), Expect = 2e-16
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| || ||||| || || | |||||||||||| || ||||| || |||||||| || ||
Sbjct 1950 TTACCGGCAAAGATCAGGCGCTGTTGATCAGGTGGGATTCCCTCCTTATCCTGGATTTTG 2009
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
|| || |||||||| | |||||| || ||| || || || || || ||||| || ||
Sbjct 2010 GCCTTCACATTTTCGATGGTATCCGAAGCTTCGACTTCAAGAGTGATGGTCTTTCCTGTG 2069
Query 104537 AGTGTTTTTACAAATATCTGCATT 104560
|| || || || || |||||||||
Sbjct 2070 AGCGTCTTGACGAAGATCTGCATT 2093
>seq4834
Length=88581
Score = 91.5 bits (100), Expect = 3e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| || || || || || | ||| || || ||||| || ||||| || |||||||||||
Sbjct 22924 TTACCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGAATCTTA 22983
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
|| || || ||||| | ||| ||| | || ||||| || || || ||||| || |||
Sbjct 22984 GCCTTGACGTTTTCGATGGTGTCGGACGCCTCAACCTCAAGGGTGATGGTCTTTCCGGTA 23043
Query 104537 AGTGTTTTTACAAATATCTGCAT 104559
|| ||||| || || ||||||||
Sbjct 23044 AGAGTTTTGACGAAGATCTGCAT 23066
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151287610287080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |