Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_005856.1
Length=94800
Score E
Sequences producing significant alignments: (Bits) Value
seq4015 188 4e-43
seq5207 104 1e-17
>seq4015
Length=3327
Score = 188 bits (208), Expect = 4e-43
Identities = 262/363 (72%), Gaps = 7/363 (2%)
Strand=Plus/Minus
Query 72269 CTACCTGCAACTTATGCGCGTCCCCGAGCTGCAA----GATAACCGAACGCTGGAAATTG 72324
|||||||||||| |||| |||| | ||| || || ||||| || || |||
Sbjct 1479 CTACCTGCAACTGATGCAGATCCCGG-GCTCCAGCGGTGACAACCGTACCAACGAGATTT 1421
Query 72325 CCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTACC-GGTGGTGGCA 72383
||||||| || ||||| || ||||| |||| |||||||| ||| | || ||| | ||
Sbjct 1420 CCGAGATCTCGCGCTCGCTCAAGGCCCTGGCCAAGGAATT-CAACTGCCCGGTCATCGCC 1362
Query 72384 TTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGACCGGTAAATTCAGAT 72443
|||| || || || || || || || ||||| | |||| || ||||| || || ||
Sbjct 1361 CTGTCGCAGCTCAACCGCTCCCTCGAGCAGCGCCCCAACAAGCGCCCGGTGAACTCCGAC 1302
Query 72444 TTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCTGTATCGCGAC 72503
|| |||||||| || || || ||||||||||| ||| |||| ||||| |||| ||||||
Sbjct 1301 TTGCGTGAATCGGGTGCGATCGAGCAGGACGCCGACGTGATCATGTTCGTGTACCGCGAC 1242
Query 72504 GAAGTTTATCACCCGGATAGCGAAATGAAGGGCATTGCCGAGGTAATTATCGGAAAGCAA 72563
|| || || ||||| || | ||| |||||||| |||||| | || ||||| |||||
Sbjct 1241 GAGGTGTACCACCCCGAGACCGAGCACAAGGGCATCGCCGAGATCATCATCGGCAAGCAG 1182
Query 72564 CGAAATGGCCCAATTGGCACGGTGAGATTGGCTTTTAACGGCCAATACTCACGGTTTGAT 72623
|| || ||||| || ||| ||| | |||| || | |||| | ||| | || || ||
Sbjct 1181 CGTAACGGCCCCATCGGCTTCGTGCGCCTGGCGTTCATCGGCAAGTACACGCGCTTCGAG 1122
Query 72624 AAC 72626
|||
Sbjct 1121 AAC 1119
>seq5207
Length=1439
Score = 104 bits (114), Expect = 1e-17
Identities = 150/209 (72%), Gaps = 2/209 (1%)
Strand=Plus/Plus
Query 8110 GTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATT 8169
||| || || ||||| ||| | | ||||| || |||||||| || | | || |
Sbjct 808 GTAACCCGCGTCGGCGCCGACCATGTTTTCCTCGCCGTGCAGCAGTTTGTCGACTTGGGT 867
Query 8170 GAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATC 8229
|| || | | |||||||| ||| |||| |||||| ||| || ||| ||||
Sbjct 868 GATATCCGCCACATTGGCCGCCGTGCCCACCACGCTGTGCACCAGACCCGACTTATCATC 927
Query 8230 GACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCAT 8289
|||||| ||||| ||||||||||| |||| |||| || || ||||||||||| |||||
Sbjct 928 GACACCGATGTGCGCCTTCATGCCGAAGTAGTACTGGTTACCCTTCTTGGTCTGGTGCAT 987
Query 8290 CTCCGGATCGCG-TTGCTGCTCTTTGTTC 8317
|| || ||||| |||| | || ||||||
Sbjct 988 TTCTGGGTCGCGTTTGCCG-TCCTTGTTC 1015
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 303207445450710
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |