Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq5063 120 3e-22
seq2066 116 3e-21
seq4834 114 1e-20
>seq5063
Length=4177
Score = 120 bits (132), Expect = 3e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|||| ||| | ||||| ||||| || | ||| || ||| | |||| | ||||||
Sbjct 2229 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCG 2288
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
|| || |||||| | ||||| || | || |||||||| ||||| ||||||||||| |
Sbjct 2289 AGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGATCTGGGGGAATTCCTTCTTTGTCCTGG 2348
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || ||||||||| ||| ||||| | | ||||| || | ||||| || ||
Sbjct 2349 ATCTTGGCCTTGACGTTCTCGATCGTGTCGGAGGCTTCGACTTCGAGGGTGATCGTCTTG 2408
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || ||||| ||||||||||| |||||
Sbjct 2409 CCGGTGAGAGTCTTCACAAAGATTTGCAT 2437
Score = 82.4 bits (90), Expect = 7e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924
|| ||| ||||||| | || |||||||||||||| || ||||| ||||| | || |||
Sbjct 3010 TTACCGGCAAAGATCAGTCGCTGCTGATCTGGAGGGATTCCTTCCTTGTCCTGGATCTTT 3069
Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984
||||| || ||| || || | ||||| || | ||||| || ||||| ||
Sbjct 3070 GCCTTCACATTCTCGATGGTATCGGAAGCTTCGACCTCCAGAGTGATCGTCTTTCCCGTG 3129
Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007
||||| ||||| ||||| |||||
Sbjct 3130 AGAGTCTTCACGAAGATTTGCAT 3152
>seq2066
Length=2850
Score = 116 bits (128), Expect = 3e-21
Identities = 168/237 (71%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832
||| || ||| || | | ||| | |||| ||| | ||| ||||||||||| | ||| |
Sbjct 1425 TTTGCATTCCACCGCGAAGTCGGAGAACCAGGTGAAGAGTCGATTCCTTTTGGATGTTGT 1484
Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892
| || || ||| | |||||| ||||| |||||| | ||||| | | || ||||
Sbjct 1485 AGTCCGACAATGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGAT 1544
Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952
|||| ||||| ||||| ||||| | || || ||||||||| ||| ||||| | |
Sbjct 1545 CTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAGG 1604
Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
||||| || | ||||| || || || || | || ||||| |||||||||||||
Sbjct 1605 CTTCGACTTCGAGGGTGATCGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATGC 1661
Score = 105 bits (116), Expect = 6e-18
Identities = 150/211 (71%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|||||||| | || || ||||| || | ||| || || || ||| | ||||||
Sbjct 1946 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCG 2005
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
|| || |||||| | ||||| || | || |||||||| ||||| ||||| ||||| |
Sbjct 2006 AGTTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGAATTCCTTCCTTGTCCTGG 2065
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || ||||||||| ||| ||||| | | ||||| || | ||||| || ||
Sbjct 2066 ATCTTGGCCTTGACGTTCTCGATGGTGTCCGAGGCTTCGACTTCGAGGGTGATCGTCTTG 2125
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| || | || ||||| |||||||||||||
Sbjct 2126 CCCGTCAAGGTCTTCACGAAGATCTGCATGC 2156
Score = 87.8 bits (96), Expect = 2e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
|| || ||||| |||||| | ||||| | | |||||||||||| || || || || |||
Sbjct 916 TCTTCGAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGATCTGGGGGGATTCCCTCCTTG 975
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || ||||||||| | | ||||| | | ||||| || | |||||
Sbjct 976 TCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCTTCGACTTCGAGAGTGATC 1035
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
|| || || || || || ||||| ||||||||||||
Sbjct 1036 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 1071
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
||||| | | ||| | |||| ||| | |||||||||||| || | ||| || ||
Sbjct 1205 CCTCCACGGAGTCGAAGGACCAGGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCCG-- 1262
Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898
| || ||| | || || ||||| |||||| | ||||| | | |||||||||||| |
Sbjct 1263 AGAGGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGATCTGGGG 1322
Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958
| || || || ||||| | || || ||||||||| ||| || || | || |
Sbjct 1323 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCCGAAGCCTCCA 1382
Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| || | ||||| || || || || || || ||||| ||||| |||||
Sbjct 1383 CTTCGAGGGTGATCGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 1431
>seq4834
Length=88581
Score = 114 bits (126), Expect = 1e-20
Identities = 152/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|||||||| | ||| || ||||| || | ||| || ||| | ||| | |||||
Sbjct 22336 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGATAACGTGCGGCCGTCCTCG 22395
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
||||| |||||| | ||||| | | |||||| || ||||| || ||||| || || | |
Sbjct 22396 AGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGAGGGATGCCTTCCTTATCTTGA 22455
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || ||||| ||| ||| ||| || | | ||||| |||| ||||| || ||
Sbjct 22456 ATCTTCGCCTTCACGTTCTCGATAGTATCCGAGGCTTCGACTTCAAGGGTGATTGTCTTC 22515
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| ||||| || ||||| |||||||||||||
Sbjct 22516 CCGGTAAGCGTCTTCACGAAGATCTGCATGC 22546
Score = 105 bits (116), Expect = 6e-18
Identities = 150/211 (71%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|||||||| | |||||| ||||| || | ||| || || | ||| | |||||
Sbjct 21131 ACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGAGTACGGCCGTCCTCA 21190
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
|||||||||||| ||||||| | | || || || ||||| || ||||| || || | |
Sbjct 21191 AGCTGTTTTCCGGCAAAGATGAGGCGCTGTTGGTCGGGAGGGATGCCTTCCTTATCTTGA 21250
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || ||||| ||| ||| ||||| | ||||| || | |||||||| |||
Sbjct 21251 ATCTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCTTCGACTTCGAGGGTGATGGTCTTT 21310
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| || || || || |||||||| |||||||
Sbjct 21311 CCGGTGAGCGTCTTGACAAAGATTTGCATGC 21341
Score = 93.3 bits (102), Expect = 4e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924
|| ||| | ||||| | | ||||| || ||||| || ||||| ||||| | ||| ||
Sbjct 22924 TTACCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGAATCTTA 22983
Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984
||||||||| ||| ||||| | || || |||| |||||||| ||||| |||
Sbjct 22984 GCCTTGACGTTTTCGATGGTGTCGGACGCCTCAACCTCAAGGGTGATGGTCTTTCCGGTA 23043
Query 94985 AGAGTTTTCACAAAGATCTGCATG 95008
|||||||| || ||||||||||||
Sbjct 23044 AGAGTTTTGACGAAGATCTGCATG 23067
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448249116663600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |