Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_006552.1
Length=65195
Score E
Sequences producing significant alignments: (Bits) Value
seq902 553 7e-153
seq5432 165 3e-36
>seq902
Length=541
Score = 553 bits (612), Expect = 7e-153
Identities = 449/541 (83%), Gaps = 11/541 (2%)
Strand=Plus/Minus
Query 9440 TCGACCCCTTCCTGGCAGCCGATGAAGTCGCGGAAGTAGTCGGAGAGCTTTCTCCCGCCC 9499
||||| |||||||||||||||||||||||||||||||| || |||| ||| | ||| |
Sbjct 537 TCGACGCCTTCCTGGCAGCCGATGAAGTCGCGGAAGTACTCCGAGACCTTCTTGCCGTTC 478
Query 9500 TTGCCCTTGATGAACGAGATGTACTGCTTCGACTGCTTGTTGTTGCGCCACTCGGAGAGG 9559
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
Sbjct 477 TTGCCCTTGATGAACGAGATGTACTGCTTGGACTGCTTGTTGTTCTGCCACTCGGAGATG 418
Query 9560 TTGATTCGCGCCGCCAGGTGTAACTGGCCGAGGTCGAGGTGGCTCGACGGGGTGACGTCC 9619
||||| || || |||||||| | |||||| ||||| ||||||| ||| ||||| ||||||
Sbjct 417 TTGATGCGAGCAGCCAGGTGCAGCTGGCCCAGGTCCAGGTGGCGCGAGGGGGTCACGTCC 358
Query 9620 AGTGACTCGTTCACCGCCGCCCCTTCGCTGTGGTGCAGCAGGGCGATCGCCAGGTAGTCG 9679
|| ||||||||||| | |||||||||||||||||||||||||| ||||||||||||
Sbjct 357 AGGTCGGCGTTCACCGCCACACCTTCGCTGTGGTGCAGCAGGGCGATGGCCAGGTAGTCG 298
Query 9680 GTCATGCCCTGCTGGTAGTGGGCGAACAGTACGTAGCCGCCGGTGGAGAGGTTGGACTCT 9739
|||||||| ||||||||||||||||||||||||| ||| |||||||| ||||| ||||||
Sbjct 297 GTCATGCCTTGCTGGTAGTGGGCGAACAGTACGTGGCCACCGGTGGACAGGTTCGACTCT 238
Query 9740 TCCATCAGCTTCTGCAGGTGTTCCACCGCCTCGCGGCTGAACCCCACGAA-GTCGCGGTC 9798
|||||||| ||||||||||| || || ||| |||||||||| | ||| ||| |
Sbjct 237 TCCATCAGTTTCTGCAGGTGCTCGACGGCCACGCGGCTGAAGGCGGTGAAGGTC----TT 182
Query 9799 GCCT---TCCAGGTACTCGCCGAGCCAGCCGCTGAACGGGTAGGCCCCGGACTCGCCCTG 9855
|||| |||||||| || ||||||||||||||||| | ||| ||||||||| | ||
Sbjct 181 GCCTTCATCCAGGTATTCCTTCAGCCAGCCGCTGAACGGATGGGCGCCGGACTCGGCGTG 122
Query 9856 GAAGAAGCCCCAGGCCTTG---TTCTTGGCGTTGTAGCTTTCGTTGAGGTCGGCCAGCAG 9912
||| | ||||||||| ||| | |||||||||||||| ||||||||||||||||||||
Sbjct 121 GAACAGGCCCCAGGCTTTGCCCTGTTTGGCGTTGTAGCTGTCGTTGAGGTCGGCCAGCAG 62
Query 9913 GTTCTCGATGACCTGGGAGTTACCCAGCTCAGCGTCGCGCGCATGGAGCACGGTCGGGGT 9972
|||||||||| | || | |||| || | |||||| || || ||||||| ||| |
Sbjct 61 GTTCTCGATGGCGGTCGACTCGGCCAGTTCCGAGTCGCGTGCGTGCAGCACGGCAGGGCT 2
Query 9973 G 9973
|
Sbjct 1 G 1
>seq5432
Length=1936
Score = 165 bits (182), Expect = 3e-36
Identities = 244/343 (71%), Gaps = 7/343 (2%)
Strand=Plus/Plus
Query 11165 CCGCCGAGCAGTTGCATGTTGCCGTTGATGTCGACCACTACCTCGGTGCTGTAGTGGTCC 11224
|| || ||||| |||||| |||| | |||||||| | | ||||||| |||| | |
Sbjct 156 CCACCCAGCAGCTGCATGGTGCCCTGCATGTCGACGATGATCTCGGTGGTGTAACGCTTG 215
Query 11225 TGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAGGCTGCCTTCGATGTAGACCTGGGAG 11284
|||||||| || |||| |||||| | || |||| |||||||| ||||| ||
Sbjct 216 ATGCCGTCCTTTTCC---CACTCGCGGGTCTGCAGCTTGCCCTCGATGTACACCTGCGAA 272
Query 11285 CCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGCCGGCCAAAGAGCACGACCCGGTGC 11344
||||| |||||||| | | || || ||||| | | ||| || | | || ||||||
Sbjct 273 CCCTTGCGCAGGTACTCGCCGGCAATCTCGGCAACCTTGCCGAACATCGAAACACGGTGC 332
Query 11345 CACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGCTTGTCTTTCCAGCTTTCGCTAGTGGCC 11404
|||||||| ||||| || |||||||||||||||||| |||| ||||| ||||||
Sbjct 333 CACTCGGTACGCTCGACCTTCTGGCCGGTCTGCTTGTCGGTCCACTGCTCGCTGGTGGCC 392
Query 11405 AGACTGAGGGAGGTGACCGCCTTTCCGCCCGG--GGTAGATCTTGCGTCTGGATCCTGGC 11462
|| |||||| ||| ||||| || ||| || ||| | | | || || |||||||
Sbjct 393 AGGCTGAGGTTGGTCACCGCGTTGCCGTTGGGCAGGTGG--CGAACTTCAGGGTCCTGGC 450
Query 11463 CCAGATGGCCGACCAGGATTACCTTGTTCACTCCGCGTGCCAT 11505
| | |||||||| || || ||||| || || || |||||
Sbjct 451 CGCAAGTGCCGACCAAAATGACTTTGTTAACCCCACGGGCCAT 493
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 208480116459160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |