Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq902 553 7e-153 seq5432 165 3e-36 >seq902 Length=541 Score = 553 bits (612), Expect = 7e-153 Identities = 449/541 (83%), Gaps = 11/541 (2%) Strand=Plus/Minus Query 9440 TCGACCCCTTCCTGGCAGCCGATGAAGTCGCGGAAGTAGTCGGAGAGCTTTCTCCCGCCC 9499 ||||| |||||||||||||||||||||||||||||||| || |||| ||| | ||| | Sbjct 537 TCGACGCCTTCCTGGCAGCCGATGAAGTCGCGGAAGTACTCCGAGACCTTCTTGCCGTTC 478 Query 9500 TTGCCCTTGATGAACGAGATGTACTGCTTCGACTGCTTGTTGTTGCGCCACTCGGAGAGG 9559 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| | Sbjct 477 TTGCCCTTGATGAACGAGATGTACTGCTTGGACTGCTTGTTGTTCTGCCACTCGGAGATG 418 Query 9560 TTGATTCGCGCCGCCAGGTGTAACTGGCCGAGGTCGAGGTGGCTCGACGGGGTGACGTCC 9619 ||||| || || |||||||| | |||||| ||||| ||||||| ||| ||||| |||||| Sbjct 417 TTGATGCGAGCAGCCAGGTGCAGCTGGCCCAGGTCCAGGTGGCGCGAGGGGGTCACGTCC 358 Query 9620 AGTGACTCGTTCACCGCCGCCCCTTCGCTGTGGTGCAGCAGGGCGATCGCCAGGTAGTCG 9679 || ||||||||||| | |||||||||||||||||||||||||| |||||||||||| Sbjct 357 AGGTCGGCGTTCACCGCCACACCTTCGCTGTGGTGCAGCAGGGCGATGGCCAGGTAGTCG 298 Query 9680 GTCATGCCCTGCTGGTAGTGGGCGAACAGTACGTAGCCGCCGGTGGAGAGGTTGGACTCT 9739 |||||||| ||||||||||||||||||||||||| ||| |||||||| ||||| |||||| Sbjct 297 GTCATGCCTTGCTGGTAGTGGGCGAACAGTACGTGGCCACCGGTGGACAGGTTCGACTCT 238 Query 9740 TCCATCAGCTTCTGCAGGTGTTCCACCGCCTCGCGGCTGAACCCCACGAA-GTCGCGGTC 9798 |||||||| ||||||||||| || || ||| |||||||||| | ||| ||| | Sbjct 237 TCCATCAGTTTCTGCAGGTGCTCGACGGCCACGCGGCTGAAGGCGGTGAAGGTC----TT 182 Query 9799 GCCT---TCCAGGTACTCGCCGAGCCAGCCGCTGAACGGGTAGGCCCCGGACTCGCCCTG 9855 |||| |||||||| || ||||||||||||||||| | ||| ||||||||| | || Sbjct 181 GCCTTCATCCAGGTATTCCTTCAGCCAGCCGCTGAACGGATGGGCGCCGGACTCGGCGTG 122 Query 9856 GAAGAAGCCCCAGGCCTTG---TTCTTGGCGTTGTAGCTTTCGTTGAGGTCGGCCAGCAG 9912 ||| | ||||||||| ||| | |||||||||||||| |||||||||||||||||||| Sbjct 121 GAACAGGCCCCAGGCTTTGCCCTGTTTGGCGTTGTAGCTGTCGTTGAGGTCGGCCAGCAG 62 Query 9913 GTTCTCGATGACCTGGGAGTTACCCAGCTCAGCGTCGCGCGCATGGAGCACGGTCGGGGT 9972 |||||||||| | || | |||| || | |||||| || || ||||||| ||| | Sbjct 61 GTTCTCGATGGCGGTCGACTCGGCCAGTTCCGAGTCGCGTGCGTGCAGCACGGCAGGGCT 2 Query 9973 G 9973 | Sbjct 1 G 1 >seq5432 Length=1936 Score = 165 bits (182), Expect = 3e-36 Identities = 244/343 (71%), Gaps = 7/343 (2%) Strand=Plus/Plus Query 11165 CCGCCGAGCAGTTGCATGTTGCCGTTGATGTCGACCACTACCTCGGTGCTGTAGTGGTCC 11224 || || ||||| |||||| |||| | |||||||| | | ||||||| |||| | | Sbjct 156 CCACCCAGCAGCTGCATGGTGCCCTGCATGTCGACGATGATCTCGGTGGTGTAACGCTTG 215 Query 11225 TGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAGGCTGCCTTCGATGTAGACCTGGGAG 11284 |||||||| || |||| |||||| | || |||| |||||||| ||||| || Sbjct 216 ATGCCGTCCTTTTCC---CACTCGCGGGTCTGCAGCTTGCCCTCGATGTACACCTGCGAA 272 Query 11285 CCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGCCGGCCAAAGAGCACGACCCGGTGC 11344 ||||| |||||||| | | || || ||||| | | ||| || | | || |||||| Sbjct 273 CCCTTGCGCAGGTACTCGCCGGCAATCTCGGCAACCTTGCCGAACATCGAAACACGGTGC 332 Query 11345 CACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGCTTGTCTTTCCAGCTTTCGCTAGTGGCC 11404 |||||||| ||||| || |||||||||||||||||| |||| ||||| |||||| Sbjct 333 CACTCGGTACGCTCGACCTTCTGGCCGGTCTGCTTGTCGGTCCACTGCTCGCTGGTGGCC 392 Query 11405 AGACTGAGGGAGGTGACCGCCTTTCCGCCCGG--GGTAGATCTTGCGTCTGGATCCTGGC 11462 || |||||| ||| ||||| || ||| || ||| | | | || || ||||||| Sbjct 393 AGGCTGAGGTTGGTCACCGCGTTGCCGTTGGGCAGGTGG--CGAACTTCAGGGTCCTGGC 450 Query 11463 CCAGATGGCCGACCAGGATTACCTTGTTCACTCCGCGTGCCAT 11505 | | |||||||| || || ||||| || || || ||||| Sbjct 451 CGCAAGTGCCGACCAAAATGACTTTGTTAACCCCACGGGCCAT 493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208480116459160