Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq6235 154 2e-33
seq2908 145 1e-30
seq1921 145 1e-30
seq6826 136 6e-28
seq7501 134 2e-27
seq3405 131 3e-26
>seq6235
Length=50531
Score = 154 bits (170), Expect = 2e-33
Identities = 178/240 (74%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| ||||||| | ||| || || |||||||| |||||||||||||| || ||
Sbjct 23323 CGCCAAGCGCCATCGCAAAGTTCTCCGCGACAACATCCAGGGAATCACCAAGCCCGCCAT 23264
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| ||||| || ||||| || ||||||||||| |||| || ||| |||| ||||| |
Sbjct 23263 CCGGCGTCTCGCCCGTCGAGGAGGAGTCAAGCGCATCTCCGGCTTGATCTACGAAGAAAC 23204
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| ||||| | ||| |||| ||||| || ||| |||
Sbjct 23203 CCGCGGAGTGCTCAAGTCTTTCCTGGAAGGCGTCATCCGCGATGCCGTCACCTACTGCGA 23144
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| |||||| ||||||| ||||||| || | || || |||||
Sbjct 23143 GCACGCCAAGCGGAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAAGG 23084
>seq2908
Length=5610
Score = 145 bits (160), Expect = 1e-30
Identities = 180/244 (74%), Gaps = 2/244 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| || || ||||||| |||| || ||||| ||||||||||| ||||||||||| || |
Sbjct 4621 CGCCAAACGCCATCGCAAGATC-CTGCGAGACAACATCCAAGGCATCACCAAGCCCGCGA 4563
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
| || ||||| || ||||||||||| || ||||| ||||||| | |||| |||||||
Sbjct 4562 TTCGCCGTCTTGCCCGTCGTGGTGGTGTGAAGCGCATCTCTGGCCTCATCTACGAAGAGA 4503
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|||| || | ||| |||||| | ||| |||| || || || ||| ||
Sbjct 4502 CCCGTGGCGTCCTCAAGTCCTTCCTGGAAGGCGTCATCCGCGACGCCGTCACCTACTGCG 4443
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
| ||||| ||||| ||||| || ||| ||||||| ||||||| || | || || || |
Sbjct 4442 AACACGCCAAACGCAAGACCGTAACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGG 4383
Query 16671 GCCG 16674
| ||
Sbjct 4382 GACG 4379
>seq1921
Length=2068
Score = 145 bits (160), Expect = 1e-30
Identities = 180/244 (74%), Gaps = 2/244 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| ||||||| |||| || ||||| ||| |||| || ||||||||||| || |
Sbjct 739 CGCCAAGCGCCATCGCAAGATC-CTGCGAGACAACGTCCAGGGCATCACCAAGCCTGCGA 681
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| ||||| || ||||||||||| || ||||| |||| || | |||| || ||||
Sbjct 680 TCCGCCGTCTTGCCCGTCGTGGTGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGA 621
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|||| || | ||| |||||| | ||| |||| || || || ||| ||
Sbjct 620 CCCGTGGCGTCCTCAAGTCCTTCCTGGAAGGCGTCATCCGCGACGCCGTCACCTACTGCG 561
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
| ||||| ||||| ||||| || ||| ||||||| ||||||| || ||||| || || |
Sbjct 560 AACACGCCAAACGCAAGACCGTAACCGCCATGGACGTCGTCTACGCCTTGAAGCGCCAGG 501
Query 16671 GCCG 16674
| ||
Sbjct 500 GACG 497
>seq6826
Length=27489
Score = 136 bits (150), Expect = 6e-28
Identities = 178/244 (73%), Gaps = 2/244 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| ||||||| |||| || ||||| ||| |||| || ||||||||||| || |
Sbjct 21873 CGCCAAGCGCCATCGCAAGATC-CTGCGAGACAACGTCCAGGGCATCACCAAGCCTGCGA 21815
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| ||||| || ||||||||||| || ||||| |||| || | |||| || ||||
Sbjct 21814 TCCGCCGTCTTGCCCGTCGTGGTGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGA 21755
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|||| || | ||| |||||| | ||| |||| || || || ||| ||
Sbjct 21754 CCCGTGGCGTCCTCAAGTCCTTCCTGGAAGGCGTCATCCGCGACGCCGTCACCTACTGCG 21695
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
| ||||| ||||| ||||| || ||| ||||||| ||||||| || | || || || |
Sbjct 21694 AACACGCCAAACGCAAGACCGTAACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGG 21635
Query 16671 GCCG 16674
| ||
Sbjct 21634 GACG 21631
>seq7501
Length=6922
Score = 134 bits (148), Expect = 2e-27
Identities = 176/241 (73%), Gaps = 2/241 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| ||||||| | || || || ||||||||||| |||||||||||||| || |
Sbjct 2402 CGCCAAGCGCCATCGCAAGGTC-CTCCGCGATAACATCCAGGGAATCACCAAGCCCGCCA 2344
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
| || ||||| ||||| || || ||||| ||||| |||| || | |||| || ||||
Sbjct 2343 TTCGCCGTCTCGCTCGCCGAGGAGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGA 2284
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| | || ||||| ||||| | || |||| || || || ||| ||
Sbjct 2283 CCCGCGGAGTGCTGAAGTCGTTCCTGGAAGGAGTCATCCGCGACGCCGTCACCTACTGCG 2224
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || |||||||||||| ||||||| ||||||| || | || || ||||
Sbjct 2223 AGCACGCCAAGCGAAAGACTGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAAG 2164
Query 16671 G 16671
|
Sbjct 2163 G 2163
>seq3405
Length=176513
Score = 131 bits (144), Expect = 3e-26
Identities = 173/240 (72%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| |||||||| |||| || || || |||||||| || ||||| ||||| || ||
Sbjct 11557 CGCCAAGCGTCACCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACGAAGCCCGCGAT 11498
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| ||||| |
Sbjct 11497 CCGACGCCTGGCCCGGCGCGGCGGTGTCAAGCGCATCTCCGGGCTCATCTACGAAGAAAC 11438
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| || | ||| |||||| || || |||| || || || |||| |||
Sbjct 11437 TCGCACGGTCCTCAAGTCCTTCCTGGAGGGAGTCATCCGCGACGCCGTCACCTATTGCGA 11378
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| |||||| ||||||| ||||||| || | |||||||||||
Sbjct 11377 GCACGCCAAGCGCAAGACAGTCACCGCCATGGACGTCGTCTACGCCCTCAAACGTCAAGG 11318
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79068333554430
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |