Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6235 154 2e-33 seq2908 145 1e-30 seq1921 145 1e-30 seq6826 136 6e-28 seq7501 134 2e-27 seq3405 131 3e-26 >seq6235 Length=50531 Score = 154 bits (170), Expect = 2e-33 Identities = 178/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| | ||| || || |||||||| |||||||||||||| || || Sbjct 23323 CGCCAAGCGCCATCGCAAAGTTCTCCGCGACAACATCCAGGGAATCACCAAGCCCGCCAT 23264 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| || ||||| || ||||||||||| |||| || ||| |||| ||||| | Sbjct 23263 CCGGCGTCTCGCCCGTCGAGGAGGAGTCAAGCGCATCTCCGGCTTGATCTACGAAGAAAC 23204 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||| | ||| |||| ||||| || ||| ||| Sbjct 23203 CCGCGGAGTGCTCAAGTCTTTCCTGGAAGGCGTCATCCGCGATGCCGTCACCTACTGCGA 23144 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| ||||||| || | || || ||||| Sbjct 23143 GCACGCCAAGCGGAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAAGG 23084 >seq2908 Length=5610 Score = 145 bits (160), Expect = 1e-30 Identities = 180/244 (74%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| || || ||||||| |||| || ||||| ||||||||||| ||||||||||| || | Sbjct 4621 CGCCAAACGCCATCGCAAGATC-CTGCGAGACAACATCCAAGGCATCACCAAGCCCGCGA 4563 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| || ||||||||||| || ||||| ||||||| | |||| ||||||| Sbjct 4562 TTCGCCGTCTTGCCCGTCGTGGTGGTGTGAAGCGCATCTCTGGCCTCATCTACGAAGAGA 4503 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| || | ||| |||||| | ||| |||| || || || ||| || Sbjct 4502 CCCGTGGCGTCCTCAAGTCCTTCCTGGAAGGCGTCATCCGCGACGCCGTCACCTACTGCG 4443 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | ||||| ||||| ||||| || ||| ||||||| ||||||| || | || || || | Sbjct 4442 AACACGCCAAACGCAAGACCGTAACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGG 4383 Query 16671 GCCG 16674 | || Sbjct 4382 GACG 4379 >seq1921 Length=2068 Score = 145 bits (160), Expect = 1e-30 Identities = 180/244 (74%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| ||||||| |||| || ||||| ||| |||| || ||||||||||| || | Sbjct 739 CGCCAAGCGCCATCGCAAGATC-CTGCGAGACAACGTCCAGGGCATCACCAAGCCTGCGA 681 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| || ||||||||||| || ||||| |||| || | |||| || |||| Sbjct 680 TCCGCCGTCTTGCCCGTCGTGGTGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGA 621 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| || | ||| |||||| | ||| |||| || || || ||| || Sbjct 620 CCCGTGGCGTCCTCAAGTCCTTCCTGGAAGGCGTCATCCGCGACGCCGTCACCTACTGCG 561 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | ||||| ||||| ||||| || ||| ||||||| ||||||| || ||||| || || | Sbjct 560 AACACGCCAAACGCAAGACCGTAACCGCCATGGACGTCGTCTACGCCTTGAAGCGCCAGG 501 Query 16671 GCCG 16674 | || Sbjct 500 GACG 497 >seq6826 Length=27489 Score = 136 bits (150), Expect = 6e-28 Identities = 178/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| ||||||| |||| || ||||| ||| |||| || ||||||||||| || | Sbjct 21873 CGCCAAGCGCCATCGCAAGATC-CTGCGAGACAACGTCCAGGGCATCACCAAGCCTGCGA 21815 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| || ||||||||||| || ||||| |||| || | |||| || |||| Sbjct 21814 TCCGCCGTCTTGCCCGTCGTGGTGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGA 21755 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| || | ||| |||||| | ||| |||| || || || ||| || Sbjct 21754 CCCGTGGCGTCCTCAAGTCCTTCCTGGAAGGCGTCATCCGCGACGCCGTCACCTACTGCG 21695 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | ||||| ||||| ||||| || ||| ||||||| ||||||| || | || || || | Sbjct 21694 AACACGCCAAACGCAAGACCGTAACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGG 21635 Query 16671 GCCG 16674 | || Sbjct 21634 GACG 21631 >seq7501 Length=6922 Score = 134 bits (148), Expect = 2e-27 Identities = 176/241 (73%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| ||||||| | || || || ||||||||||| |||||||||||||| || | Sbjct 2402 CGCCAAGCGCCATCGCAAGGTC-CTCCGCGATAACATCCAGGGAATCACCAAGCCCGCCA 2344 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| ||||| || || ||||| ||||| |||| || | |||| || |||| Sbjct 2343 TTCGCCGTCTCGCTCGCCGAGGAGGAGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGA 2284 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| ||||| | || |||| || || || ||| || Sbjct 2283 CCCGCGGAGTGCTGAAGTCGTTCCTGGAAGGAGTCATCCGCGACGCCGTCACCTACTGCG 2224 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || |||||||||||| ||||||| ||||||| || | || || |||| Sbjct 2223 AGCACGCCAAGCGAAAGACTGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAAG 2164 Query 16671 G 16671 | Sbjct 2163 G 2163 >seq3405 Length=176513 Score = 131 bits (144), Expect = 3e-26 Identities = 173/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| || || || |||||||| || ||||| ||||| || || Sbjct 11557 CGCCAAGCGTCACCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACGAAGCCCGCGAT 11498 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| ||||| | Sbjct 11497 CCGACGCCTGGCCCGGCGCGGCGGTGTCAAGCGCATCTCCGGGCTCATCTACGAAGAAAC 11438 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| || | ||| |||||| || || |||| || || || |||| ||| Sbjct 11437 TCGCACGGTCCTCAAGTCCTTCCTGGAGGGAGTCATCCGCGACGCCGTCACCTATTGCGA 11378 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| ||||||| || | ||||||||||| Sbjct 11377 GCACGCCAAGCGCAAGACAGTCACCGCCATGGACGTCGTCTACGCCCTCAAACGTCAAGG 11318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79068333554430