Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_007023.1
Length=180500
Score E
Sequences producing significant alignments: (Bits) Value
seq2257 206 3e-48
>seq2257
Length=8409
Score = 206 bits (228), Expect = 3e-48
Identities = 310/438 (71%), Gaps = 2/438 (0%)
Strand=Plus/Plus
Query 41788 AAGCTGTCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCC 41847
||| | || || || ||||| || |||||||| ||||| || || || || ||||| |
Sbjct 5473 AAGATTTCCTTGCCCACGCCCATCATGGCTGGCGTGCGCACACCCACTCGCCAGTTCAGC 5532
Query 41848 AGTTGCGTAGTGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCTGCG 41907
|||||| |||| |||| | || |||| | ||||| ||| ||
Sbjct 5533 TCTTGCGTGCTGATCGAATGTGACGACAGCCTGGACAGCATCAATGCCACGACCAGCGCC 5592
Query 41908 ATCGTGAAGTATATTTCACAACGCGCGGGTATCGGTGTTAATGCTGGACACATTCGCGCA 41967
|| || || | ||||| || || ||||||||| | |||| ||| | |||||||||
Sbjct 5593 ATTGTTCGTTACGTGTCACAGCGTGCCGGTATCGGTATCAATGGTGGCCGCATTCGCGCC 5652
Query 41968 ATGGGTTCTAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTGGAAA 42027
| || |||| ||||||||||||||| ||| || || | ||||||| ||
Sbjct 5653 GTAGGCAGCGAAATTCGTGGTGGTGAAGCACAACACACGGGTTGCCTGCCGTTCT-TCAA 5711
Query 42028 CATATT-CAGACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAAC 42086
|| || ||| | ||||| || ||||| || ||||| ||||| ||||||||||| |||||
Sbjct 5712 GATGTTCCAGGCTGCGGTGAAGTCCTGCTCGCAAGGCGGCGTGCGTGGTGGTGCGGCAAC 5771
Query 42087 GTTGTATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAA 42146
|||| || || || ||||| ||||||| |||| |||||||||||||| ||||||
Sbjct 5772 CTTGTTCTACCCCATGTGGCACCTGGAAGTGGAAACACTGCTGGTTCTGAAGAACAACCG 5831
Query 42147 AGGTGTTGAGAATAACCGTATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTTGAT 42206
||||| || | ||||||||||||||| |||| || || |||||| | ||| ||| |
Sbjct 5832 TGGTGTGGAAGAAAACCGTATTCGTCACTTGGACTACGGTGTTCAGATCAACCGCTTGCT 5891
Query 42207 GTATAAGCGTTTAATCAA 42224
||| |||| | |||||
Sbjct 5892 GTACCAGCGCCTGATCAA 5909
Score = 91.5 bits (100), Expect = 2e-13
Identities = 191/282 (68%), Gaps = 2/282 (1%)
Strand=Plus/Plus
Query 43546 GTTGCCCGATATGAAGAACAAAAACATCGCGTATTCGAAACTTTGACTGAAAAACAACTG 43605
|| || || || || | |||||| ||| | || |||| ||| |||||| || ||
Sbjct 7234 GTGGCTCGCTACGACCAGCAAAAATATCCGATTTTTGAAAAGCTGATTGAAAAGCAGTTG 7293
Query 43606 TCATTCTTCTGGCGACCGGAAGAAGTGGATCTGTCGATCGACCGTATGCAGTATGCAAAA 43665
|| ||||||||||| ||||| |||||||| | | ||||| || | ||| ||
Sbjct 7294 TCCTTCTTCTGGCGTCCGGAGGAAGTGGACATTACCCAGGACCGGATCGACTATCAGAAC 7353
Query 43666 ATGCCGGAACACGAGAAAATCATTTTTGATTCTAACCTGCAATATCAAACCCTGTTAGAT 43725
|||| || ||||| || |||||| || ||| | ||||| ||| || | |||
Sbjct 7354 CTGCCTGACCACGAAAAGCACATTTTCATCAGCAATCTGAAGTATCAGACCTTGCTGGAT 7413
Query 43726 ACCATTCAGGGACGTGGCCCTAACCTGGCGTTTCTCCCGATTGCCTCTGATGTTTCA-AT 43784
|||| ||||| || |||| ||| |||| || || || | | || ||| | |
Sbjct 7414 TCCATCCAGGGCCGCAGCCCCAACGTGGCCTTCCTGCCTTTGGTATC-GATTCCGGAGCT 7472
Query 43785 GGAAACGTGGATCGAAACATGGGCTTTCAGTGAAACAATTCA 43826
|||||| ||||| ||||| ||||||||| || || |||||
Sbjct 7473 GGAAACCTGGATTGAAACCTGGGCTTTCTCCGAGACGATTCA 7514
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577417789816000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |