Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq5063 114 1e-20 seq2066 105 6e-18 seq4834 82.4 7e-11 >seq5063 Length=4177 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || | || || || |||| ||| |||||||||| ||| Sbjct 2438 AATGCAAATCTTTGTGAAGACTCTCACCGGCAAGACGATCACCCTCGAAGTCGAAGCCTC 2379 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||| |||||| | ||||| ||||| ||||||||||| || || || ||||| Sbjct 2378 CGACACGATCGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCA 2319 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||| | |||| | || ||| ||||||||||| |||| | | | | ||| || || Sbjct 2318 ACAGCGCTTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACTCTTTCCGACTACAA 2259 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| || || || ||||| Sbjct 2258 CATCCAGAAGGAGTCTAC 2241 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || || || |||| ||| |||||||||| ||| | Sbjct 2813 ATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACGATCACCCTCGAAGTCGAAGCCTCC 2754 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| ||||| ||||| || || || |||||| Sbjct 2753 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAA 2694 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | || ||| ||||||||||| |||| | | | | | || || ||| Sbjct 2693 CAGCGTTTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTGTCGGACTACAAC 2634 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || || ||||| || |||| Sbjct 2633 ATCCAGAAGGAATCGACTCTTCA 2611 >seq2066 Length=2850 Score = 105 bits (116), Expect = 6e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || || || || ||||| || |||| || |||||||||| || Sbjct 211 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACGATAACTCTCGAAGTCGAAGCTTC 152 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| ||| | ||||| |||||| ||||| |||||||| || || ||||| Sbjct 151 TGACACCATTGAGAATGTCAAGGCGAAGATTCAAGACAAGGAAGGCATTCCCCCAGATCA 92 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 |||| | || || | || ||| ||||||||||| |||| Sbjct 91 ACAGCGCCTCATCTTCGCCGGAAAGCAACTCGAGGATG 54 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || || || || |||| ||| |||||||||| ||| Sbjct 1659 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACGATCACCCTCGAAGTCGAAGCCTCG 1600 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| ||||| |||||||| || || |||||| Sbjct 1599 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAA 1540 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||| ||||| ||||| |||| | | | | || || ||| Sbjct 1539 CAGCGCCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACATTGTCGGACTACAAC 1480 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || ||||| ||||| || |||| Sbjct 1479 ATCCAAAAGGAATCGACTCTTCA 1457 Score = 98.7 bits (108), Expect = 9e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || || || || |||| ||| |||||||||| ||| Sbjct 2154 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACGATCACCCTCGAAGTCGAAGCCTCG 2095 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| ||||| ||||| || || || |||||| Sbjct 2094 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAA 2035 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||| | |||| | || ||| ||||||||||| |||| Sbjct 2034 CAGCGTTTGATCTTCGCCGGAAAGCAACTCGAGGATG 1998 >seq4834 Length=88581 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || ||||| | || ||| | || || ||||| | Sbjct 23066 ATGCAGATCTTCGTCAAAACTCTTACCGGAAAGACCATCACCCTTGAGGTTGAGGCGTCC 23007 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| ||||| |||||||| |||||||| || Sbjct 23006 GACACCATCGAAAACGTCAAGGCTAAGATTCAGGACAAGGAAGGCATCCCTCCCGACCAG 22947 Query 24111 CAGAGACTGATTTACGGCGGCAAGC 24135 ||| | ||||| | || ||| |||| Sbjct 22946 CAGCGCCTGATCTTCGCCGGTAAGC 22922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429896648764050