Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq5063 114 1e-20
seq2066 105 6e-18
seq4834 82.4 7e-11
>seq5063
Length=4177
Score = 114 bits (126), Expect = 1e-20
Identities = 144/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049
||||||| | ||||| || || | || || || |||| ||| |||||||||| |||
Sbjct 2438 AATGCAAATCTTTGTGAAGACTCTCACCGGCAAGACGATCACCCTCGAAGTCGAAGCCTC 2379
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
|||||| |||||| | ||||| ||||| ||||||||||| || || || |||||
Sbjct 2378 CGACACGATCGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCA 2319
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169
|||| | |||| | || ||| ||||||||||| |||| | | | | ||| || ||
Sbjct 2318 ACAGCGCTTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACTCTTTCCGACTACAA 2259
Query 24170 CATTCAAAAAGAATCTAC 24187
||| || || || |||||
Sbjct 2258 CATCCAGAAGGAGTCTAC 2241
Score = 109 bits (120), Expect = 5e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | || || || || | || || || |||| ||| |||||||||| ||| |
Sbjct 2813 ATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACGATCACCCTCGAAGTCGAAGCCTCC 2754
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||||||| | ||||| ||||| ||||| ||||| || || || ||||||
Sbjct 2753 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAA 2694
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| | |||| | || ||| ||||||||||| |||| | | | | | || || |||
Sbjct 2693 CAGCGTTTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTGTCGGACTACAAC 2634
Query 24171 ATTCAAAAAGAATCTACAATTCA 24193
|| || || ||||| || ||||
Sbjct 2633 ATCCAGAAGGAATCGACTCTTCA 2611
>seq2066
Length=2850
Score = 105 bits (116), Expect = 6e-18
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049
||||||| | || || || || || ||||| || |||| || |||||||||| ||
Sbjct 211 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACGATAACTCTCGAAGTCGAAGCTTC 152
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
|||||||| ||| | ||||| |||||| ||||| |||||||| || || |||||
Sbjct 151 TGACACCATTGAGAATGTCAAGGCGAAGATTCAAGACAAGGAAGGCATTCCCCCAGATCA 92
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147
|||| | || || | || ||| ||||||||||| ||||
Sbjct 91 ACAGCGCCTCATCTTCGCCGGAAAGCAACTCGAGGATG 54
Score = 105 bits (116), Expect = 6e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || || || || || || || |||| ||| |||||||||| |||
Sbjct 1659 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACGATCACCCTCGAAGTCGAAGCCTCG 1600
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||||||| | ||||| ||||| ||||| |||||||| || || ||||||
Sbjct 1599 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAA 1540
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| | || || | || ||| ||||| ||||| |||| | | | | || || |||
Sbjct 1539 CAGCGCCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACATTGTCGGACTACAAC 1480
Query 24171 ATTCAAAAAGAATCTACAATTCA 24193
|| ||||| ||||| || ||||
Sbjct 1479 ATCCAAAAGGAATCGACTCTTCA 1457
Score = 98.7 bits (108), Expect = 9e-16
Identities = 116/157 (74%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || || || || || || || |||| ||| |||||||||| |||
Sbjct 2154 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACGATCACCCTCGAAGTCGAAGCCTCG 2095
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||||||| | ||||| ||||| ||||| ||||| || || || ||||||
Sbjct 2094 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAA 2035
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147
||| | |||| | || ||| ||||||||||| ||||
Sbjct 2034 CAGCGTTTGATCTTCGCCGGAAAGCAACTCGAGGATG 1998
>seq4834
Length=88581
Score = 82.4 bits (90), Expect = 7e-11
Identities = 105/145 (72%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || ||||| | || ||||| | || ||| | || || ||||| |
Sbjct 23066 ATGCAGATCTTCGTCAAAACTCTTACCGGAAAGACCATCACCCTTGAGGTTGAGGCGTCC 23007
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | ||||| |||||| ||||| |||||||| |||||||| ||
Sbjct 23006 GACACCATCGAAAACGTCAAGGCTAAGATTCAGGACAAGGAAGGCATCCCTCCCGACCAG 22947
Query 24111 CAGAGACTGATTTACGGCGGCAAGC 24135
||| | ||||| | || ||| ||||
Sbjct 22946 CAGCGCCTGATCTTCGCCGGTAAGC 22922
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429896648764050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |