Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4834 118 1e-21 seq5063 105 6e-18 seq7237 87.8 2e-12 >seq4834 Length=88581 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || || || | || |||||||| || |||||||| ||| Sbjct 22318 CCGCCACGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAT 22377 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| |||||||| || ||| |||| | || ||||||||||||||| Sbjct 22378 AACGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGAGGG 22437 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || || ||| ||| | | ||| | |||||| | || |||| Sbjct 22438 ATGCCTTCCTTATCTTGAATCTTCGCCTTCACGTTCTCGATAGTATCCGAGGCTTCGACT 22497 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | || || ||||| || || || ||||| ||||||||| Sbjct 22498 TCAAGGGTGATTGTCTTCCCGGTAAGCGTCTTCACGAAGATCTGCATG 22545 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | || |||||||| ||||||||||| || Sbjct 21113 CCACCACGAAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAA 21172 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| ||||| || || || |||| | ||||| ||||| |||||| Sbjct 21173 AGAGTACGGCCGTCCTCAAGCTGTTTTCCGGCAAAGATGAGGCGCTGTTGGTCGGGAGGG 21232 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || || ||| ||| | | ||| | || || | | |||| Sbjct 21233 ATGCCTTCCTTATCTTGAATCTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCTTCGACT 21292 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || ||||| || || || || || || |||||| Sbjct 21293 TCGAGGGTGATGGTCTTTCCGGTGAGCGTCTTGACAAAGATTTGCATG 21340 Score = 89.7 bits (98), Expect = 5e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 131090 GCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTT 131149 |||| || ||| |||| | ||||||||||| |||||||| ||||| ||||| || | Sbjct 22922 GCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGAATCT 22981 Query 131150 TCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGG 131209 | ||||| | || | || |||| | ||| | || | ||| | ||| || |||| Sbjct 22982 TAGCCTTGACGTTTTCGATGGTGTCGGACGCCTCAACCTCAAGGGTGATGGTCTTTCCGG 23041 Query 131210 TTAGAGTTTTTACGAAAATCTGCATGACTTAT 131241 | |||||||| ||||| |||||||||||| || Sbjct 23042 TAAGAGTTTTGACGAAGATCTGCATGACTGAT 23073 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || ||||| | || |||||||| || |||||||| ||| | Sbjct 21705 CCACCACGAAGACGGAGTACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 21764 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || | || | || || |||||||| || ||| | || | ||||||||||| ||||| Sbjct 21765 AAAGTTCTGCCA-TCTTCAAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCAGGAGG 21823 Query 131127 GATTCCTTCTTTGTC 131141 ||| ||||| || || Sbjct 21824 GATGCCTTCCTTATC 21838 >seq5063 Length=4177 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| || || | || | ||| |||||||| || |||||||| ||| | ||||| Sbjct 2222 ACGAAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCC 2281 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 ||||| || ||||| || ||| |||| || ||||| || || || || ||||||||||| Sbjct 2282 ATCCTCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGATCTGGGGGAATTCCTTCTTT 2341 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| ||| || ||||| | ||| | || |||| || |||| |||| ||| | Sbjct 2342 GTCCTGGATCTTGGCCTTGACGTTCTCGATCGTGTCGGAGGCTTCGACTTCGAGGGTGAT 2401 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || ||||| ||||| || || || || ||||| Sbjct 2402 CGTCTTGCCGGTGAGAGTCTTCACAAAGATTTGCAT 2437 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || || | || | || |||||||| || |||||||| ||| Sbjct 1668 CCACCGCGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1727 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||| || ||||||||||| || |||| | |||||||| || || ||| Sbjct 1728 AGAGTGCGCCCGTCTTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCGGGTGGG 1787 Query 131128 ATTCCTTCTTTGTC 131141 ||||| || ||||| Sbjct 1788 ATTCCCTCCTTGTC 1801 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | || || || || || | ||| |||||||| || |||||||| || Sbjct 3154 CCACCGCGGAGTCGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAG 3213 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || |||||||| || || |||| | || |||||||| || ||| Sbjct 3214 AGGGTACGTCCGTCTTCGAGCTGCTTTCCGGCAAAGATGAGGCGTTGCTGGTCTGGGGGG 3273 Query 131128 ATTCCTTCTTTGTC 131141 |||||||| ||||| Sbjct 3274 ATTCCTTCCTTGTC 3287 >seq7237 Length=102105 Score = 87.8 bits (96), Expect = 2e-12 Identities = 434/694 (63%), Gaps = 63/694 (9%) Strand=Plus/Plus Query 145898 AGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCC 145957 || || || ||||||| |||||||| || ||||| | || | | ||||| |||||| Sbjct 85641 AGTCCAGGGCACTTGTGCGGACACATGAGGGACCACTCCTTGTCGTCCTTGACACGCTCC 85700 Query 145958 ATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCG--CGCTTTGCAATCCTCAG 146015 || ||||| || || | ||| ||| |||| | | ||||| ||| | | ||||| | Sbjct 85701 ATGAACAAGTCGGGGATCCAGAGCCCGTAGAAGAGATCGCGAGCGCGCTCC--TCCTCCG 85758 Query 146016 CACCCATGTTTCGCTTCAAATTAAGCACACTATA-GATGTCCGCGTGCCACGGTTCAATA 146074 || |||| | ||||| | || | ||| | ||||||||||||||| || || || Sbjct 85759 ATCCGGTGTTCCTCTTCAGACGCAGGA-ACTCGAAGATGTCCGCGTGCCATGGCTCGATG 85817 Query 146075 TAGACGGCGAGGGCTCC---------------TT------------TTCGT--------- 146098 |||| ||||| |||||| || |||| Sbjct 85818 TAGATGGCGAAGGCTCCAGGACGCTGGAAACATTCAAGAATAAGAACTCGTCAAGGCACC 85877 Query 146099 -------------TTGCCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCAC 146145 || || || ||||| |||| || | ||||||| |||| |||| Sbjct 85878 AAATCCTACCTTGTTTCCTCCTTGGTCGACGTAGCGAGCGGTGTTGTTGTAGACCCGCAG 85937 Query 146146 CATGGGCTCGACGCCGCTGGCTACGCCGTTCGT---AGAGTTTATTCTGGTGCCGCGGGA 146202 ||| || || ||| ||| |||||| || || | || || ||| || Sbjct 85938 CATAGGAATGAGTCCGTTGGAGGTGCCGTTGGTCCCAGCG---ATGAGAGTTCCGGAGGC 85994 Query 146203 GCGCACGCAATGAACATTCACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTC 146262 || | ||| || ||||| | ||||| |||||| || ||||||| || ||||| | Sbjct 85995 TCGAATGCAGTGGACATTGAGGCCGATTCCGCCGGCGGACTTGGAGATCAGAGCGCACTG 86054 Query 146263 GCCGAGCGTCTCGTAGATGCCGTCAATGCTATCGCTTCGAATGCCGAGCAGAAAGCACGA 146322 | ||| |||| | |||||||||| ||| ||| | ||| |||||| ||||| || Sbjct 86055 CCAGAGGGTCTTGAAGATGCCGTCGATGGAGTCGTCACTCATGGTGAGCAGGAAGCAGGA 86114 Query 146323 GCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGT-AAACA 146381 || |||||| | | | || || || ||| | |||||| || || || || || Sbjct 86115 GCTCATCTGGGGCTTGCAGGTGCCGGCGTTGAAGAGCGTCGGCGAGGCATGGGTGAACCA 86174 Query 146382 TTTTTCGGCTCATCATCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGC 146441 |||| ||| | || |||||||| ||| | | ||||| || || || | Sbjct 86175 CCGCTCGG-ACATGAGGTTGTAGGTTTCGATGGCGGCGTTGATGTCTTCCTTGTGGATTC 86233 Query 146442 CCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTCCGCCACTTGATTGTCAATCTTTA 146501 | | || |||||||| ||||| |||||||| || ||| | || | ||| ||||| | Sbjct 86234 CGACGGCCACGCGCATCAGCATATGTTGGGGTCGTTCCACGACCTTCCCGTCGATCTTGA 86293 Query 146502 ACAAATAGCCGTTCTCCAGGGTTTTGTATCCGAA 146535 | ||| | ||||||||| ||| | ||||| Sbjct 86294 GGAGGTAGGAGCGCTCCAGGGTCTTGAAGCCGAA 86327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471968489798400