Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq7223 172 4e-38 seq2066 109 4e-19 seq6089 100 2e-16 seq4834 100 2e-16 seq6916 89.7 3e-13 >seq7223 Length=30619 Score = 172 bits (190), Expect = 4e-38 Identities = 229/315 (73%), Gaps = 6/315 (2%) Strand=Plus/Plus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233 ||||| || || ||||| ||| | |||||||||||||| |||||||| | || Sbjct 21358 AACGTGAACCGCAATGTTCTGGATCCCTTCTACCGCTACAAGATGCCGCGACTTCAAGCG 21417 Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 |||||||| || ||||||||||| || ||||| || || | ||||||| || | | Sbjct 21418 AAGGTCGAAGGAAAGGGAAACGGCATCAAAACTGTAATAGCCAACATGGTGGAGATTGGA 21477 Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353 ||| |||| | ||||| | ||||||||||| ||||||||||| || ||| | || || Sbjct 21478 AAGTCGCTGGAGCGCCCACCAACCTACCCGACTAAATATTTCGGATGTGAATTGGGTGCG 21537 Query 6354 CAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGC- 6412 || ||| | | || ||| ||||| |||| ||| |||||||| || | || ||| Sbjct 21538 CAAACGAACATCGACACCAAGAACGATCGCTACATTGTTAACGG--CG-AACACGATGCG 21594 Query 6413 --CAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGC 6470 ||||| || ||| | ||||| || ||||||||||| || || || |||| | |||| Sbjct 21595 AATAAGCTCCAAGACATTCTTGATGGATTTATTCGCAAATTCGTTCTATGTCCAGCATGC 21654 Query 6471 GATAACCCGGAGACC 6485 || ||||| || ||| Sbjct 21655 GACAACCCTGAAACC 21669 >seq2066 Length=2850 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||| |||||||| |||||||| || ||||| || ||||| || | || || Sbjct 1451 ACCAGGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCCGACAATGTGCGGCCATCCTCG 1510 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | || |||||||| || || ||||| |||||||| | ||| | |||||| |||||| Sbjct 1511 AGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGATCTGGGGGAATGCCTTCCTTGTCCTGG 1570 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||| || |||| || || || ||| ||||| | || || || || Sbjct 1571 ATCTTGGCCTTGACGTTCTCGATGGTGTCCGAGGCTTCGACTTCGAGGGTGATCGTCTTG 1630 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||||||||| |||||||| ||||||||| Sbjct 1631 CCCGTCAAGGTCTTCACGAAGATCTGCATG 1660 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||| | ||||| || || ||| |||||| || || ||||| | Sbjct 1924 CATT-CCACCACGGAGACGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGT 1982 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | |||| || | || || | ||| |||||||| || || | || |||||||| | Sbjct 1983 CCGACAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTG 2042 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | ||||| |||||| || || ||| || |||| || || || || Sbjct 2043 GGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAGGCTT 2102 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | ||||| | || || || || ||||||||||| |||||||| ||||||||| Sbjct 2103 CGACTTCGAGGGTGATCGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATG 2155 >seq6089 Length=24741 Score = 100 bits (110), Expect = 2e-16 Identities = 213/315 (68%), Gaps = 6/315 (2%) Strand=Plus/Minus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233 ||||| || ||| |||| ||| | ||||| || ||||| ||||| || | | Sbjct 8876 AACGTGAACCGTCATGTTTTGGATCCCTTCTATCGTTACAAGATGCCTCGACTTCAAGTA 8817 Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 | | |||| || || ||||||||||||||||| || || | ||||||| || | | Sbjct 8816 AGGATCGAAGGAAAAGGAAACGGTATTAAAACTGTAATAGCCAACATGGTGGAGATTGGA 8757 Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353 | | | || | ||| | | || || | || || |||||||| |||||| | || ||| Sbjct 8756 ACGTCTCTTGATCGCTCACCAACGTATCTTACTAAGTATTTCGGCTGCGAATTGGGAGCT 8697 Query 6354 CAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGC- 6412 || || | | ||| | | || || |||| ||| || ||||| || | || ||| Sbjct 8696 CAAACAAACATCGATACCGAGAATGACCGCTACATTGTAAACGG--CG-AACACGATGCG 8640 Query 6413 --CAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGC 6470 ||||| || | | | ||||| || || ||||| || || || || |||| | |||| Sbjct 8639 AATAAGCTCCAAGGCATTCTTGATGGTTTCATTCGTAAATTCGTTCTATGTCCAGTATGC 8580 Query 6471 GATAACCCGGAGACC 6485 || ||||| |||||| Sbjct 8579 GACAACCCTGAGACC 8565 >seq4834 Length=88581 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||||| || ||||| |||||| ||||| ||||| || || Sbjct 21113 CCACCACGAAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAA 21172 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | ||| |||| || | |||||||||||||| || ||||| ||||| |||| ||| Sbjct 21173 AGAGTACGGCCGTCCTCAAGCTGTTTTCCGGCAAAGATGAGGCGCTGTTGGTCGGGAGGG 21232 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| || || ||| || |||||| |||| || || || | ||| ||| Sbjct 21233 ATGCCTTCCTTATCTTGAATCTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCTTCGACT 21292 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || || || | || || || || || |||||| Sbjct 21293 TCGAGGGTGATGGTCTTTCCGGTGAGCGTCTTGACAAAGATTTGCATG 21340 >seq6916 Length=23635 Score = 89.7 bits (98), Expect = 3e-13 Identities = 214/317 (68%), Gaps = 10/317 (3%) Strand=Plus/Plus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233 ||||| |||||| |||| ||| | ||||| || ||||| ||||| || | || Sbjct 7875 AACGTGAATCGTCATGTTCTGGATCCCTTCTATCGTTACAAGATGCCTCGACTTCAAGCA 7934 Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 ||| | || || |||||||||||||| ||||| || || | ||||||| || | | Sbjct 7935 AAGATAGAAGGAAAGGGAAACGGTATCAAAACTGTTATAGCCAACATGGTGGAGATTGGA 7994 Query 6294 AAGGCGCTCGGA-CGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGC 6352 ||| | || ||| || || | | || | || || |||||||| |||||| | || || Sbjct 7995 AAGTC-CTTGGACCGTCCACCTGCATATCTTACTAAGTATTTCGGTTGCGAATTGGGAGC 8053 Query 6353 TCAGACGCAGTTTGATCACA-AAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTG 6411 ||| || | | ||| ||| | |||| ||| ||| || ||||| | | || || Sbjct 8054 TCAAACAAAAATCGAT-ACAGAGAACGGTCGCCACATAGTGAACGG---GGACCACGATG 8109 Query 6412 C---CAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAAT 6468 | ||||| || ||| | ||||| || || || || || || | || |||| | || Sbjct 8110 CGAATAAGCTCCAAGACATTCTTGATGGTTTCATCCGTAATTTCATTCTATGTCCAGCAT 8169 Query 6469 GCGATAACCCGGAGACC 6485 | || || || |||||| Sbjct 8170 GTGACAATCCTGAGACC 8186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334916542910810