Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq7223 172 4e-38
seq2066 109 4e-19
seq6089 100 2e-16
seq4834 100 2e-16
seq6916 89.7 3e-13
>seq7223
Length=30619
Score = 172 bits (190), Expect = 4e-38
Identities = 229/315 (73%), Gaps = 6/315 (2%)
Strand=Plus/Plus
Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233
||||| || || ||||| ||| | |||||||||||||| |||||||| | ||
Sbjct 21358 AACGTGAACCGCAATGTTCTGGATCCCTTCTACCGCTACAAGATGCCGCGACTTCAAGCG 21417
Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293
|||||||| || ||||||||||| || ||||| || || | ||||||| || | |
Sbjct 21418 AAGGTCGAAGGAAAGGGAAACGGCATCAAAACTGTAATAGCCAACATGGTGGAGATTGGA 21477
Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353
||| |||| | ||||| | ||||||||||| ||||||||||| || ||| | || ||
Sbjct 21478 AAGTCGCTGGAGCGCCCACCAACCTACCCGACTAAATATTTCGGATGTGAATTGGGTGCG 21537
Query 6354 CAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGC- 6412
|| ||| | | || ||| ||||| |||| ||| |||||||| || | || |||
Sbjct 21538 CAAACGAACATCGACACCAAGAACGATCGCTACATTGTTAACGG--CG-AACACGATGCG 21594
Query 6413 --CAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGC 6470
||||| || ||| | ||||| || ||||||||||| || || || |||| | ||||
Sbjct 21595 AATAAGCTCCAAGACATTCTTGATGGATTTATTCGCAAATTCGTTCTATGTCCAGCATGC 21654
Query 6471 GATAACCCGGAGACC 6485
|| ||||| || |||
Sbjct 21655 GACAACCCTGAAACC 21669
>seq2066
Length=2850
Score = 109 bits (120), Expect = 4e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168
|||| |||||||| |||||||| || ||||| || ||||| || | || ||
Sbjct 1451 ACCAGGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCCGACAATGTGCGGCCATCCTCG 1510
Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228
| || |||||||| || || ||||| |||||||| | ||| | |||||| ||||||
Sbjct 1511 AGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGATCTGGGGGAATGCCTTCCTTGTCCTGG 1570
Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288
|| || ||| || |||| || || || ||| ||||| | || || || ||
Sbjct 1571 ATCTTGGCCTTGACGTTCTCGATGGTGTCCGAGGCTTCGACTTCGAGGGTGATCGTCTTG 1630
Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATG 38318
||||||||||| |||||||| |||||||||
Sbjct 1631 CCCGTCAAGGTCTTCACGAAGATCTGCATG 1660
Score = 96.9 bits (106), Expect = 2e-15
Identities = 162/233 (70%), Gaps = 1/233 (0%)
Strand=Plus/Plus
Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145
|||| ||||| | | ||| | ||||| || || ||| |||||| || || ||||| |
Sbjct 1924 CATT-CCACCACGGAGACGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGT 1982
Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205
| |||| || | || || | ||| |||||||| || || | || |||||||| |
Sbjct 1983 CCGACAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTG 2042
Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265
||| | ||||| |||||| || || ||| || |||| || || || ||
Sbjct 2043 GGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAGGCTT 2102
Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
| ||||| | || || || || ||||||||||| |||||||| |||||||||
Sbjct 2103 CGACTTCGAGGGTGATCGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATG 2155
>seq6089
Length=24741
Score = 100 bits (110), Expect = 2e-16
Identities = 213/315 (68%), Gaps = 6/315 (2%)
Strand=Plus/Minus
Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233
||||| || ||| |||| ||| | ||||| || ||||| ||||| || | |
Sbjct 8876 AACGTGAACCGTCATGTTTTGGATCCCTTCTATCGTTACAAGATGCCTCGACTTCAAGTA 8817
Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293
| | |||| || || ||||||||||||||||| || || | ||||||| || | |
Sbjct 8816 AGGATCGAAGGAAAAGGAAACGGTATTAAAACTGTAATAGCCAACATGGTGGAGATTGGA 8757
Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353
| | | || | ||| | | || || | || || |||||||| |||||| | || |||
Sbjct 8756 ACGTCTCTTGATCGCTCACCAACGTATCTTACTAAGTATTTCGGCTGCGAATTGGGAGCT 8697
Query 6354 CAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGC- 6412
|| || | | ||| | | || || |||| ||| || ||||| || | || |||
Sbjct 8696 CAAACAAACATCGATACCGAGAATGACCGCTACATTGTAAACGG--CG-AACACGATGCG 8640
Query 6413 --CAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGC 6470
||||| || | | | ||||| || || ||||| || || || || |||| | ||||
Sbjct 8639 AATAAGCTCCAAGGCATTCTTGATGGTTTCATTCGTAAATTCGTTCTATGTCCAGTATGC 8580
Query 6471 GATAACCCGGAGACC 6485
|| ||||| ||||||
Sbjct 8579 GACAACCCTGAGACC 8565
>seq4834
Length=88581
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | | ||| | ||||| || ||||| |||||| ||||| ||||| || ||
Sbjct 21113 CCACCACGAAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAA 21172
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | ||| |||| || | |||||||||||||| || ||||| ||||| |||| |||
Sbjct 21173 AGAGTACGGCCGTCCTCAAGCTGTTTTCCGGCAAAGATGAGGCGCTGTTGGTCGGGAGGG 21232
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| |||||| || || ||| || |||||| |||| || || || | ||| |||
Sbjct 21233 ATGCCTTCCTTATCTTGAATCTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCTTCGACT 21292
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| | || || || || || || | || || || || || ||||||
Sbjct 21293 TCGAGGGTGATGGTCTTTCCGGTGAGCGTCTTGACAAAGATTTGCATG 21340
>seq6916
Length=23635
Score = 89.7 bits (98), Expect = 3e-13
Identities = 214/317 (68%), Gaps = 10/317 (3%)
Strand=Plus/Plus
Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233
||||| |||||| |||| ||| | ||||| || ||||| ||||| || | ||
Sbjct 7875 AACGTGAATCGTCATGTTCTGGATCCCTTCTATCGTTACAAGATGCCTCGACTTCAAGCA 7934
Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293
||| | || || |||||||||||||| ||||| || || | ||||||| || | |
Sbjct 7935 AAGATAGAAGGAAAGGGAAACGGTATCAAAACTGTTATAGCCAACATGGTGGAGATTGGA 7994
Query 6294 AAGGCGCTCGGA-CGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGC 6352
||| | || ||| || || | | || | || || |||||||| |||||| | || ||
Sbjct 7995 AAGTC-CTTGGACCGTCCACCTGCATATCTTACTAAGTATTTCGGTTGCGAATTGGGAGC 8053
Query 6353 TCAGACGCAGTTTGATCACA-AAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTG 6411
||| || | | ||| ||| | |||| ||| ||| || ||||| | | || ||
Sbjct 8054 TCAAACAAAAATCGAT-ACAGAGAACGGTCGCCACATAGTGAACGG---GGACCACGATG 8109
Query 6412 C---CAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAAT 6468
| ||||| || ||| | ||||| || || || || || || | || |||| | ||
Sbjct 8110 CGAATAAGCTCCAAGACATTCTTGATGGTTTCATCCGTAATTTCATTCTATGTCCAGCAT 8169
Query 6469 GCGATAACCCGGAGACC 6485
| || || || ||||||
Sbjct 8170 GTGACAATCCTGAGACC 8186
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334916542910810
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |