Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq5063 111 1e-19 seq4834 104 2e-17 >seq5063 Length=4177 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| |||||| | ||||| || | ||||| ||||||| || | || Sbjct 2438 AATGCAAATCTTTGTGAAGACTCTCACCGGCAAGACGATCACCCTCGAAGTCGAAGCCTC 2379 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| | ||| || ||| ||||||||||| ||||| || || || Sbjct 2378 CGACACGATCGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCA 2319 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || || ||||| || ||| | || |||| |||||| | ||| ||||| Sbjct 2318 ACAGCGCTTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACTCTTTCCGACTACAA 2259 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || || || || || || || || Sbjct 2258 CATCCAGAAGGAGTCTACCCTCCA 2235 >seq4834 Length=88581 Score = 104 bits (114), Expect = 2e-17 Identities = 165/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | ||||| || ||||||| ||||||| || | || Sbjct 21339 ATGCAAATCTTTGTCAAGACGCTCACCGGAAAGACCATCACCCTCGAAGTCGAAGCTTCG 21280 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| ||||| | || | ||| || || ||||| || || || ||||| Sbjct 21279 GACACAATCGAGAACGTGAAGGCGAAGATTCAA-GATAAGGAAGGCATCCCTCCCGACCA 21221 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || |||||||| ||||| | || || | || ||| | || ||||| Sbjct 21220 ACAGCGCCTCATCTTTGCCGGAAAACAGCTTGAGGACGGCCGTACTCTTTCAGACTACAA 21161 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 ||||| || || || || || || || || || | || | || |||| ||| Sbjct 21160 CATTCAGAAGGAGTCTACTCTCCACTTGGTCCTCCGTCTTCGTGGTGGAATTTA 21107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433288338300650