Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2066 122 7e-23 seq5063 109 5e-19 seq4834 98.7 8e-16 seq471 82.4 6e-11 >seq2066 Length=2850 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || || || || || ||| | ||||| ||||| ||| | | Sbjct 210 ATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACGATAACTCTCGAAGTCGAAGCTTCT 151 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || |||||||||||||| || ||||| || |||||| Sbjct 150 GACACCATTGAGAATGTCAAGGCGAAGATTCAAGACAAGGAAGGCATTCCCCCAGATCAA 91 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || ||||| || || | |||||| |||||| | || || |||||| Sbjct 90 CAGCGCCTCATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACTCTTTCGGACTACAAC 31 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || || || || |||||| | || || ||| Sbjct 30 ATCCAGAAGGAGTCCACCCTCCACTTGGTT 1 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || ||| ||||||| ||||| ||| || || Sbjct 1070 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACGATCACTCTCGAAGTCGAAGCCTCC 1011 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || |||||||||||||| || || || ||||| Sbjct 1010 GACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCAGATCAG 951 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || || ||||| || ||| | || || || ||| |||| || |||||| Sbjct 950 CAACGCCTCATCTTCGCCGGAAAGCAGCTCGAAGACGGACGAACCCTCTCGGACTACAAC 891 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || |||||| | || | ||| | ||| | ||||| || Sbjct 890 ATCCAGAAGGAGTCCACCCTTCACCTGGTTCTTCGACTTCGCGGTGG 844 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || ||| |||| || |||||||| | | Sbjct 1431 ATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACGATCACCCTCGAAGTGGAGGCTTCG 1372 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| || || || ||||||||||| || || || ||||| Sbjct 1371 GATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 1312 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || || ||||| || ||| | || || || ||| |||| || |||||| Sbjct 1311 CAACGCCTCATCTTCGCCGGAAAGCAGCTCGAAGACGGACGAACCCTCTCGGACTACAAC 1252 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || ||||| || Sbjct 1251 ATCCAGAAGGAATCTAC 1235 >seq5063 Length=4177 Score = 109 bits (120), Expect = 5e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 22256 TCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACA 22315 ||||||||||||| ||| || | || ||| | || || | || || ||||| |||| Sbjct 1857 TCACTCTTGAAGTCGAAGCCTCGGACACCATTGAAAATGTGAAGGCCAAGATTCAGGACA 1798 Query 22316 AGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATC 22375 ||||||| || ||||||||||| || || || || ||||| ||||| ||| | || || Sbjct 1797 AGGAGGGAATCCCACCCGATCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAAGACG 1738 Query 22376 ACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||||| ||||||| |||||||| || || || ||||| Sbjct 1737 GGCGCACTCTCTCCGACTACAACATCCAGAAGGAGTCCAC 1698 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || ||||||||||| || || || || || || ||||| || || |||||||| || Sbjct 3296 AAGATCCAAGACAAGGAAGGAATCCCCCCAGACCAGCAACGCCTCATCTTTGCCGGAAAG 3237 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | || || || ||| |||| || |||||||| || || || |||||| | || Sbjct 3236 CAGCTCGAAGACGGACGTACCCTCTCGGACTACAACATCCAGAAGGAGTCCACCCTCCAC 3177 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 || ||| | ||| | ||||| || Sbjct 3176 TTGGTTCTCCGACTCCGCGGTGG 3154 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365 ||||| ||||||||||| || ||||||||||| || || || || |||||||| || ||| Sbjct 2037 ATTCAGGACAAGGAGGGAATCCCACCCGATCAGCAGCGCCTCATCTTTGCCGGAAAGCAG 1978 Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 | || || ||||| |||| || ||||| || || || || ||||| Sbjct 1977 CTCGAAGACGGGCGCACTCTCTCGGACTACAATATCCAGAAGGAGTCCAC 1928 >seq4834 Length=88581 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | ||||| || || |||| || ||||| ||| | | Sbjct 21339 ATGCAAATCTTTGTCAAGACGCTCACCGGAAAGACCATCACCCTCGAAGTCGAAGCTTCG 21280 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || |||||||| ||||| || || || ||||| ||| Sbjct 21279 GACACAATCGAGAACGTGAAGGCGAAGATTCAAGATAAGGAAGGCATCCCTCCCGACCAA 21220 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || |||||||| |||||| | ||||| ||| || | || || |||||| Sbjct 21219 CAGCGCCTCATCTTTGCCGGAAAACAGCTTGAGGACGGCCGTACTCTTTCAGACTACAAC 21160 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 21159 ATTCAGAAGGAGTCTAC 21143 >seq471 Length=2147 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || ||||||||||||| ||| | | Sbjct 2092 ATGCAGATCTTCGTCAAGACGCTCACAGGAAAGACCATCACTCTTGAAGTCGAAGCTTCG 2033 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || ||||| || || |||||||| || ||||| |||||| Sbjct 2032 GATACCATCGAAAATGTGAAGGCCAAAATCCAGGATAAGGAGGGAATCCCACCTGATCAA 1973 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 || || || || |||||||| || Sbjct 1972 CAGCGCCTGATCTTTGCCGGTAA 1950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419689583083150