Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq2066 122 7e-23
seq5063 109 5e-19
seq4834 98.7 8e-16
seq471 82.4 6e-11
>seq2066
Length=2850
Score = 122 bits (134), Expect = 7e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || || || || || || ||| | ||||| ||||| ||| | |
Sbjct 210 ATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACGATAACTCTCGAAGTCGAAGCTTCT 151
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || || |||| || |||||||||||||| || ||||| || ||||||
Sbjct 150 GACACCATTGAGAATGTCAAGGCGAAGATTCAAGACAAGGAAGGCATTCCCCCAGATCAA 91
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || || ||||| || || | |||||| |||||| | || || ||||||
Sbjct 90 CAGCGCCTCATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACTCTTTCGGACTACAAC 31
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428
|| || || || |||||| | || || |||
Sbjct 30 ATCCAGAAGGAGTCCACCCTCCACTTGGTT 1
Score = 122 bits (134), Expect = 7e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | ||||| || ||| ||||||| ||||| ||| || ||
Sbjct 1070 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACGATCACTCTCGAAGTCGAAGCCTCC 1011
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | |||| || || |||||||||||||| || || || |||||
Sbjct 1010 GACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCAGATCAG 951
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||||| || || || ||||| || ||| | || || || ||| |||| || ||||||
Sbjct 950 CAACGCCTCATCTTCGCCGGAAAGCAGCTCGAAGACGGACGAACCCTCTCGGACTACAAC 891
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| || || || |||||| | || | ||| | ||| | ||||| ||
Sbjct 890 ATCCAGAAGGAGTCCACCCTTCACCTGGTTCTTCGACTTCGCGGTGG 844
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || || | ||||| || ||| |||| || |||||||| | |
Sbjct 1431 ATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACGATCACCCTCGAAGTGGAGGCTTCG 1372
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | || | |||| || || || ||||||||||| || || || |||||
Sbjct 1371 GATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 1312
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||||| || || || ||||| || ||| | || || || ||| |||| || ||||||
Sbjct 1311 CAACGCCTCATCTTCGCCGGAAAGCAGCTCGAAGACGGACGAACCCTCTCGGACTACAAC 1252
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || || ||||| ||
Sbjct 1251 ATCCAGAAGGAATCTAC 1235
>seq5063
Length=4177
Score = 109 bits (120), Expect = 5e-19
Identities = 120/160 (75%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 22256 TCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACA 22315
||||||||||||| ||| || | || ||| | || || | || || ||||| ||||
Sbjct 1857 TCACTCTTGAAGTCGAAGCCTCGGACACCATTGAAAATGTGAAGGCCAAGATTCAGGACA 1798
Query 22316 AGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATC 22375
||||||| || ||||||||||| || || || || ||||| ||||| ||| | || ||
Sbjct 1797 AGGAGGGAATCCCACCCGATCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAAGACG 1738
Query 22376 ACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415
||||| ||||||| |||||||| || || || |||||
Sbjct 1737 GGCGCACTCTCTCCGACTACAACATCCAGAAGGAGTCCAC 1698
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || ||||||||||| || || || || || || ||||| || || |||||||| ||
Sbjct 3296 AAGATCCAAGACAAGGAAGGAATCCCCCCAGACCAGCAACGCCTCATCTTTGCCGGAAAG 3237
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||| | || || || ||| |||| || |||||||| || || || |||||| | ||
Sbjct 3236 CAGCTCGAAGACGGACGTACCCTCTCGGACTACAACATCCAGAAGGAGTCCACCCTCCAC 3177
Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445
|| ||| | ||| | ||||| ||
Sbjct 3176 TTGGTTCTCCGACTCCGCGGTGG 3154
Score = 82.4 bits (90), Expect = 6e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365
||||| ||||||||||| || ||||||||||| || || || || |||||||| || |||
Sbjct 2037 ATTCAGGACAAGGAGGGAATCCCACCCGATCAGCAGCGCCTCATCTTTGCCGGAAAGCAG 1978
Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415
| || || ||||| |||| || ||||| || || || || |||||
Sbjct 1977 CTCGAAGACGGGCGCACTCTCTCGGACTACAATATCCAGAAGGAGTCCAC 1928
>seq4834
Length=88581
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| ||||| || || | ||||| || || |||| || ||||| ||| | |
Sbjct 21339 ATGCAAATCTTTGTCAAGACGCTCACCGGAAAGACCATCACCCTCGAAGTCGAAGCTTCG 21280
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | || | | || || |||||||| ||||| || || || ||||| |||
Sbjct 21279 GACACAATCGAGAACGTGAAGGCGAAGATTCAAGATAAGGAAGGCATCCCTCCCGACCAA 21220
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || |||||||| |||||| | ||||| ||| || | || || ||||||
Sbjct 21219 CAGCGCCTCATCTTTGCCGGAAAACAGCTTGAGGACGGCCGTACTCTTTCAGACTACAAC 21160
Query 22399 ATTCAAAAAGAATCCAC 22415
||||| || || || ||
Sbjct 21159 ATTCAGAAGGAGTCTAC 21143
>seq471
Length=2147
Score = 82.4 bits (90), Expect = 6e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | || || || || ||||||||||||| ||| | |
Sbjct 2092 ATGCAGATCTTCGTCAAGACGCTCACAGGAAAGACCATCACTCTTGAAGTCGAAGCTTCG 2033
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | || || | || ||||| || || |||||||| || ||||| ||||||
Sbjct 2032 GATACCATCGAAAATGTGAAGGCCAAAATCCAGGATAAGGAGGGAATCCCACCTGATCAA 1973
Query 22339 CAACGTCTTATATTTGCCGGCAA 22361
|| || || || |||||||| ||
Sbjct 1972 CAGCGCCTGATCTTTGCCGGTAA 1950
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419689583083150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |