Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq5063 107 2e-18 seq2066 107 2e-18 seq4834 105 6e-18 >seq5063 Length=4177 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || || |||||||| ||| | ||| || ||| || ||||| || || Sbjct 2241 GTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCGAGTTGCTTTCCG 2300 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | |||||||| || || ||||| ||||||||||| ||||| || Sbjct 2301 GCGAAGATCAAGCGCTGTTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTG 2360 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||||| || |||||| || | ||| | ||| |||||||| ||||| Sbjct 2361 ACGTTCTCGATCGTGTCGGAGGCTTCGACTTCGAGGGTGATCGTCTTGCCGGTGAGAGTC 2420 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| || ||||| Sbjct 2421 TTCACAAAGATTTGCAT 2437 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| || || || || ||| || ||||| || || Sbjct 2617 GTCGATTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCGAGTTGCTTTCCG 2676 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | ||||||||| || || ||||| ||||| ||||| ||||| || Sbjct 2677 GCGAAGATCAAACGCTGTTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTG 2736 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||||| || |||||| || | ||| | ||| ||||||||||| || Sbjct 2737 ACGTTCTCGATGGTGTCGGAGGCTTCGACTTCGAGGGTGATCGTCTTGCCGGTCAGGGTC 2796 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || || || || |||||| || Sbjct 2797 TTCACGAAGATTTGCATGCCT 2817 >seq2066 Length=2850 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || |||| | ||| | || | || ||||| ||||| |||||||| || Sbjct 1430 ATTCCACCGCGAAGTCGGAGAACCAGGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCC 1489 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| || || || || || ||| ||||||| |||||||| || || Sbjct 1490 GACAATGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGATCTGGG 1549 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||| || | | || | |||||| | || |||| Sbjct 1550 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAGGCTTCG 1609 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || || | ||| | ||| ||||| |||| || || || || ||||||||| || Sbjct 1610 ACTTCGAGGGTGATCGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATGCCT 1663 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | || || || || || |||||||| || | ||| || ||| || Sbjct 1 AACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTC 60 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 ||||| || || ||| ||||||| |||||||| || || ||||||||||| ||||| Sbjct 61 GAGTTGCTTTCCGGCGAAGATGAGGCGCTGTTGATCTGGGGGAATGCCTTCCTTGTCTTG 120 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 |||||| || | | |||| |||||| | | |||||| || | || | ||| || Sbjct 121 AATCTTCGCCTTGACATTCTCAATGGTGTCAGAAGCTTCGACTTCGAGAGTTATCGTCTT 180 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| |||| || || || || || ||||| Sbjct 181 GCCAGTCAAGGTCTTCACGAAGATTTGCAT 210 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 ||||| || || || || ||| ||||||| || || || || || || || || || ||| Sbjct 916 TCTTCGAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGATCTGGGGGGATTCCCTCCTTG 975 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| || | | |||| |||||||| || |||||| || | || | | Sbjct 976 TCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCTTCGACTTCGAGAGTGATC 1035 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || ||||||||||| || || || || ||||||||| Sbjct 1036 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 1071 >seq4834 Length=88581 Score = 105 bits (116), Expect = 6e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 114151 AAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAAT 114210 |||| || ||||| || | | || || || | ||||| || || ||||||||||| | Sbjct 21108 AAATTCCACCACGAAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGT 21167 Query 114211 CGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCG 114270 | | |||||| || ||||| ||||| || || ||||||| ||||||||||| | Sbjct 21168 CTGAAAGAGTACGGCCGTCCTCAAGCTGTTTTCCGGCAAAGATGAGGCGCTGTTGGTCGG 21227 Query 114271 GAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATT 114330 |||| |||||||| || || |||||| || | | || | ||||| | | || Sbjct 21228 GAGGGATGCCTTCCTTATCTTGAATCTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCTT 21287 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 |||| || | ||| | || || ||||| || || || ||||| || |||||| Sbjct 21288 CGACTTCGAGGGTGATGGTCTTTCCGGTGAGCGTCTTGACAAAGATTTGCATG 21340 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | ||| || || | || || || || || |||||||| ||| Sbjct 22315 ATACCGCCACGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCG 22374 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || || || || || || ||| ||||||| || || ||||||||| Sbjct 22375 GATAACGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGA 22434 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| || || |||||| || | | || | || || | || |||| Sbjct 22435 GGGATGCCTTCCTTATCTTGAATCTTCGCCTTCACGTTCTCGATAGTATCCGAGGCTTCG 22494 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || || ||||| || || || || || ||||||||| Sbjct 22495 ACTTCAAGGGTGATTGTCTTCCCGGTAAGCGTCTTCACGAAGATCTGCATG 22545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420095945886120