Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2066 123 2e-23 seq4834 113 5e-20 seq5063 107 2e-18 seq7156 86.0 6e-12 >seq2066 Length=2850 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | || ||| || || |||| || ||||| || || |||||||| || | | Sbjct 1205 CCTCCACGGAGTCGAAGGACCAGGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAG 1264 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| || ||||||| |||||||| ||||| | ||||| || ||||| || || || Sbjct 1265 AGGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGATCTGGGGGG 1324 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||| || || || || || || ||| || ||| | ||||| || |||||| Sbjct 1325 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCCGAAGCCTCCACT 1384 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | ||||||||||||| || || ||||| ||||||||| Sbjct 1385 TCGAGGGTGATCGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATT 1432 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | || ||| || || |||| || || || || || |||||||| || | | Sbjct 844 CCACCGCGAAGTCGAAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAG 903 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| || ||||||| |||||||| ||||| | ||||| || ||||| || || || Sbjct 904 AGGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGATCTGGGGGG 963 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||| || || ||||| || || ||| || ||| | || || ||| || ||| Sbjct 964 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCTTCGACT 1023 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | ||||||||||||| || || ||||| || ||||| Sbjct 1024 TCGAGAGTGATCGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1070 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | |||||| | || || || ||||| ||| Sbjct 1958 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCGAGTTGCTTTCCG 2017 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | ||||| || || || ||||||||||| || || || || || ||| Sbjct 2018 GCGAAGATCAAACGCTGTTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTG 2077 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || || ||| || ||||| | || | |||||||| ||||| || Sbjct 2078 ACGTTCTCGATGGTGTCCGAGGCTTCGACTTCGAGGGTGATCGTCTTGCCCGTCAAGGTC 2137 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 2138 TTCACGAAGATCTGCAT 2154 >seq4834 Length=88581 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || ||||||||||| |||| | || || |||| |||||||| || ||| Sbjct 21143 GTAGACTCCTTCTGAATGTTGTAGTCTGAAAGAGTACGGCCGTCCTCAAGCTGTTTTCCG 21202 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| ||||| ||||||||||| || ||||| || ||||| || || ||| Sbjct 21203 GCAAAGATGAGGCGCTGTTGGTCGGGAGGGATGCCTTCCTTATCTTGAATCTTCGCCTTC 21262 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | ||| || || || ||||| | || | |||||| ||||| | || Sbjct 21263 ACGTTCTCGATTGTGTCCGAAGCTTCGACTTCGAGGGTGATGGTCTTTCCGGTGAGCGTC 21322 Query 64427 TTTACGAAAATTTGCAT 64443 || || || |||||||| Sbjct 21323 TTGACAAAGATTTGCAT 21339 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | || | | |||||||||||||| ||| Sbjct 21735 GTAGACTCCTTCTGGATGTTGTAGTCGGACAAAGTTCTGCCATCTTCAAGCTGCTTTCCG 21794 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTAT 64356 || ||||||| ||||||||||| ||||| || ||||| || ||||| || Sbjct 21795 GCGAAAATGAGGCGCTGCTGGTCAGGAGGGATGCCTTCCTTATCTTGAAT 21844 >seq5063 Length=4177 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || |||| |||||||| || || |||||||| || | | |||||| | || Sbjct 2602 AGCACCAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCC 2661 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || ||||| ||||| | || | ||||| || || || ||||||||||| || || Sbjct 2662 TCGAGTTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGAATTCCTTCCTTGTCC 2721 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || || ||| || ||||| | || | ||| Sbjct 2722 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGACTTCGAGGGTGATCGTC 2781 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||| || || ||||| |||||||| Sbjct 2782 TTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 2813 Score = 100 bits (110), Expect = 3e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || || || || |||||||| || | || |||||| ||||| Sbjct 1683 AGAACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGCCCGTCT 1742 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || || |||||||| ||||| || ||||| || || || Sbjct 1743 TCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCGGGTGGGATTCCCTCCTTGTCC 1802 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || ||| || ||||| | ||| | |||| Sbjct 1803 TGAATCTTGGCCTTCACATTTTCAATGGTGTCCGAGGCTTCGACTTCAAGAGTGATGGTC 1862 Query 64412 TTGCC 64416 || || Sbjct 1863 TTTCC 1867 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | || || || || || |||||||| || | | ||||| | || Sbjct 2225 AAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATC 2284 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || || ||||| ||||| | || | ||||| || || || |||||||||||||| || Sbjct 2285 CTCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGATCTGGGGGAATTCCTTCTTTGTC 2344 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || ||| | || || ||| || ||||| | || | || Sbjct 2345 CTGGATCTTGGCCTTGACGTTCTCGATCGTGTCGGAGGCTTCGACTTCGAGGGTGATCGT 2404 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||||||| | ||| || || || ||||||||| Sbjct 2405 CTTGCCGGTGAGAGTCTTCACAAAGATTTGCATT 2438 >seq7156 Length=22399 Score = 86.0 bits (94), Expect = 6e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 ||||| | || || ||||||||||| || |||||||| || || ||||| | | || || Sbjct 9866 CCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATTCCCTCCTTATCTTGGA-TCTTGGC 9808 Query 64364 TTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAA 64422 ||| ||| || | || ||| ||| || || || | ||| | ||||||||| ||||| Sbjct 9807 TTTGACATTTTCGATGGTGTCAGAGGCCTCGACCTCGAGAGTGATGGTCTTGCCAGTCAA 9748 Query 64423 AGTTTTTACGAAAATTTGCAT 64443 || || |||||||| ||||| Sbjct 9747 GGTCTTGACGAAAATCTGCAT 9727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499597895844400