Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq7237 156 4e-33
>seq7237
Length=102105
Score = 156 bits (172), Expect = 4e-33
Identities = 302/443 (68%), Gaps = 12/443 (3%)
Strand=Plus/Minus
Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783
||||| | |||||| || |||||| || |||||||||||||| || || | |||
Sbjct 86330 TACTTCGGCTTCAAGACCCTGGAGCGCTCCTACCTCCTCAAGATCGACGGGAAGGTCGTG 86271
Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACAT---- 93839
|| ||||| || || ||||||||||||| ||| |||| || ||| | |||||
Sbjct 86270 GAACGACCCCAACATATGCTGATGCGCGTGGCCGTCGGAATCCACAAGGAAGACATCAAC 86211
Query 93840 GCCGA-ATGTTTTGCGGG-CTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACC 93897
|||| || || | | || |||| || | ||| ||| ||| |
Sbjct 86210 GCCGCCAT------CGAAACCTACAACCTCATGTCCGAGCGGTGGTTCACCCATGCCTCG 86157
Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACG 93957
||||| || |||||||| || ||| ||| |||||| || || |||||| | ||
Sbjct 86156 CCGACGCTCTTCAACGCCGGCACCTGCAAGCCCCAGATGAGCTCCTGCTTCCTGCTCACC 86097
Query 93958 AACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCA 94017
| | | |||||||||| ||| || ||| | | |||| | | || || |||||
Sbjct 86096 ATGAGTGACGACTCCATCGACGGCATCTTCAAGACCCTCTGGCAGTGCGCTCTGATCTCC 86037
Query 94018 AAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATC 94077
|| | ||| || |||||||| ||| ||||||| | | || ||| || | ||||
Sbjct 86036 AAGTCCGCCGGCGGAATCGGCCTCAATGTCCACTGCATTCGAGCCTCCGGAACTCTCATC 85977
Query 94078 CGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCG 94137
|| ||||| |||||||||||||| ||| | |||||||| ||||||| ||||||| |
Sbjct 85976 GCTGGGACCAACGGCACCTCCAACGGACTCATTCCTATGCTGCGGGTCTACAACAACACC 85917
Query 94138 GCGCGCTACGTGGACCAGGGTGG 94160
|| |||||||| ||||| || ||
Sbjct 85916 GCTCGCTACGTCGACCAAGGAGG 85894
Score = 145 bits (160), Expect = 8e-30
Identities = 267/386 (69%), Gaps = 24/386 (6%)
Strand=Plus/Minus
Query 94456 CTGTGGGATCAGATCGTGGACGTA-CAGGTGGAGACGGGTACGCCCTACATCTTGTTCAA 94514
|| ||||| ||||||| |||| ||| | || || || || || ||||| | | |||
Sbjct 85503 CTTTGGGAGGAGATCGTC-ACGTCGCAGATCGAAACCGGCACTCCTTACATGCTCTACAA 85445
Query 94515 GGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCT 94574
|||| | |||| |||||||||||| || |||||||| ||||||| |||| || ||
Sbjct 85444 GGACGCCTGCAACCAGAAGTCCAACCAGAAGAACCTCGGGACGATCAAGTGCTCCAACCT 85385
Query 94575 GTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTC 94634
||||||||||| ||| |||| |||| || || || | || ||||| ||||||| |||
Sbjct 85384 CTGCACCGAGATCGTCCAGTACTCTTCGCCTGAAGAAGTAGCCGTGTGCAACCTGGCCTC 85325
Query 94635 CATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGTCTACTG-CTTCGTTCG-ATCTG 94692
| || |||| | ||||| || | | | | || || || || || | ||
Sbjct 85324 CGTCGCCCTGAACCGCTTCGTCACCGAGG---AGAAGACTTTTGACTACG--CGAAGCTC 85270
Query 94693 GAGGAGCTTGTGAA---CTTCGCGGGAAGGATGGTCTTGAACCTGAACAGGGTAATCGAC 94749
| ||| | ||| | || || | ||||||||||| | | ||||||
Sbjct 85269 CACGAGATCACGAAGGTCATCACGAG------------GAACCTGAACAAGATCATCGAC 85222
Query 94750 AAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCCCATCGGC 94809
||||| |||||| || || ||||| |||| ||| ||| || ||||||||| || ||
Sbjct 85221 GCGAACTACTACCCTGTGCCCGAGGCCGAGACCTCCAACAAGAGGCATCGGCCGATTGGA 85162
Query 94810 ATCGGCGTCCAGGGTTTCGCGGACGC 94835
||||| |||||||| || ||||||||
Sbjct 85161 ATCGGAGTCCAGGGCTTGGCGGACGC 85136
Score = 86.0 bits (94), Expect = 6e-12
Identities = 88/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 95095 CTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCG 95154
|| || ||||| |||||||| ||||| || || ||||||||||| || ||||||||||||
Sbjct 84861 CTCCTGGTGGCGCCCATGCCAACGGCATCGACAGCGCAGATCCTAGGAAACAACGAGTCG 84802
Query 95155 TTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCC 95209
| || || | ||| || ||| | |||| | || |||||| | || || ||||
Sbjct 84801 ATGGAGCCGTACACGTCGAACATCTACAGTCGCCGCGTGCTCTCTGGCGACTTCC 84747
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494676757859600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |