Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq7237 156 4e-33 >seq7237 Length=102105 Score = 156 bits (172), Expect = 4e-33 Identities = 302/443 (68%), Gaps = 12/443 (3%) Strand=Plus/Minus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||| | |||||| || |||||| || |||||||||||||| || || | ||| Sbjct 86330 TACTTCGGCTTCAAGACCCTGGAGCGCTCCTACCTCCTCAAGATCGACGGGAAGGTCGTG 86271 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACAT---- 93839 || ||||| || || ||||||||||||| ||| |||| || ||| | ||||| Sbjct 86270 GAACGACCCCAACATATGCTGATGCGCGTGGCCGTCGGAATCCACAAGGAAGACATCAAC 86211 Query 93840 GCCGA-ATGTTTTGCGGG-CTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACC 93897 |||| || || | | || |||| || | ||| ||| ||| | Sbjct 86210 GCCGCCAT------CGAAACCTACAACCTCATGTCCGAGCGGTGGTTCACCCATGCCTCG 86157 Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACG 93957 ||||| || |||||||| || ||| ||| |||||| || || |||||| | || Sbjct 86156 CCGACGCTCTTCAACGCCGGCACCTGCAAGCCCCAGATGAGCTCCTGCTTCCTGCTCACC 86097 Query 93958 AACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCA 94017 | | | |||||||||| ||| || ||| | | |||| | | || || ||||| Sbjct 86096 ATGAGTGACGACTCCATCGACGGCATCTTCAAGACCCTCTGGCAGTGCGCTCTGATCTCC 86037 Query 94018 AAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATC 94077 || | ||| || |||||||| ||| ||||||| | | || ||| || | |||| Sbjct 86036 AAGTCCGCCGGCGGAATCGGCCTCAATGTCCACTGCATTCGAGCCTCCGGAACTCTCATC 85977 Query 94078 CGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCG 94137 || ||||| |||||||||||||| ||| | |||||||| ||||||| ||||||| | Sbjct 85976 GCTGGGACCAACGGCACCTCCAACGGACTCATTCCTATGCTGCGGGTCTACAACAACACC 85917 Query 94138 GCGCGCTACGTGGACCAGGGTGG 94160 || |||||||| ||||| || || Sbjct 85916 GCTCGCTACGTCGACCAAGGAGG 85894 Score = 145 bits (160), Expect = 8e-30 Identities = 267/386 (69%), Gaps = 24/386 (6%) Strand=Plus/Minus Query 94456 CTGTGGGATCAGATCGTGGACGTA-CAGGTGGAGACGGGTACGCCCTACATCTTGTTCAA 94514 || ||||| ||||||| |||| ||| | || || || || || ||||| | | ||| Sbjct 85503 CTTTGGGAGGAGATCGTC-ACGTCGCAGATCGAAACCGGCACTCCTTACATGCTCTACAA 85445 Query 94515 GGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCT 94574 |||| | |||| |||||||||||| || |||||||| ||||||| |||| || || Sbjct 85444 GGACGCCTGCAACCAGAAGTCCAACCAGAAGAACCTCGGGACGATCAAGTGCTCCAACCT 85385 Query 94575 GTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTC 94634 ||||||||||| ||| |||| |||| || || || | || ||||| ||||||| ||| Sbjct 85384 CTGCACCGAGATCGTCCAGTACTCTTCGCCTGAAGAAGTAGCCGTGTGCAACCTGGCCTC 85325 Query 94635 CATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGTCTACTG-CTTCGTTCG-ATCTG 94692 | || |||| | ||||| || | | | | || || || || || | || Sbjct 85324 CGTCGCCCTGAACCGCTTCGTCACCGAGG---AGAAGACTTTTGACTACG--CGAAGCTC 85270 Query 94693 GAGGAGCTTGTGAA---CTTCGCGGGAAGGATGGTCTTGAACCTGAACAGGGTAATCGAC 94749 | ||| | ||| | || || | ||||||||||| | | |||||| Sbjct 85269 CACGAGATCACGAAGGTCATCACGAG------------GAACCTGAACAAGATCATCGAC 85222 Query 94750 AAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCCCATCGGC 94809 ||||| |||||| || || ||||| |||| ||| ||| || ||||||||| || || Sbjct 85221 GCGAACTACTACCCTGTGCCCGAGGCCGAGACCTCCAACAAGAGGCATCGGCCGATTGGA 85162 Query 94810 ATCGGCGTCCAGGGTTTCGCGGACGC 94835 ||||| |||||||| || |||||||| Sbjct 85161 ATCGGAGTCCAGGGCTTGGCGGACGC 85136 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 95095 CTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCG 95154 || || ||||| |||||||| ||||| || || ||||||||||| || |||||||||||| Sbjct 84861 CTCCTGGTGGCGCCCATGCCAACGGCATCGACAGCGCAGATCCTAGGAAACAACGAGTCG 84802 Query 95155 TTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCC 95209 | || || | ||| || ||| | |||| | || |||||| | || || |||| Sbjct 84801 ATGGAGCCGTACACGTCGAACATCTACAGTCGCCGCGTGCTCTCTGGCGACTTCC 84747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494676757859600