Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq7237 129 6e-25
seq5063 89.7 5e-13
seq4834 89.7 5e-13
seq2066 87.8 2e-12
seq2592 82.4 8e-11
>seq7237
Length=102105
Score = 129 bits (142), Expect = 6e-25
Identities = 482/766 (63%), Gaps = 55/766 (7%)
Strand=Plus/Plus
Query 153843 TCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGAC 153902
|| ||||| | |||||| |||| ||| || || |||| ||||||||||| || |||
Sbjct 85614 TCGAACTCCTTTCCGTAGGCGTCGTGGAGTCCAGGGCACTTGTGCGGACACATGAGGGAC 85673
Query 153903 CACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATG 153962
||| | |||| | ||||| || |||||||| || || | ||||||| |||| | |
Sbjct 85674 CACTCCTTGTCGTCCTTGACACGCTCCATGAACAAGTCGGGGATCCAGAGCCCGTAGAAG 85733
Query 153963 AGGTCGCG--CGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCA-CGCTA 154019
|| ||||| ||| | | ||||||| || |||| | |||||| || | | | |
Sbjct 85734 AGATCGCGAGCGCGCTCC--TCCTCCGATCCGGTGTTCCTCTTCAGACGCAGGAACTCGA 85791
Query 154020 TAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCT-------- 154071
||||||| |||||||| || || ||||||| ||| | ||| || |||||
Sbjct 85792 -AGATGTCCGCGTGCCATGGCTCGATGTAGATGGCGAAGGCTCCAGGACGCTGGAAACAT 85850
Query 154072 -----------------------------------------TTCCGCCCTGATCGACGTG 154090
|||| || || |||||||
Sbjct 85851 TCAAGAATAAGAACTCGTCAAGGCACCAAATCCTACCTTGTTTCCTCCTTGGTCGACGTA 85910
Query 154091 GCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGT 154150
||| | | |||||| |||| |||| ||| || || ||| | | ||||||||||||
Sbjct 85911 GCGAGCGGTGTTGTTGTAGACCCGCAGCATAGGAATGAGTCCGTTGGAGGTGCCGTTGGT 85970
Query 154151 CGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCC 154210
| | ||| | ||| ||| || | || || || | ||| || |||||| |
Sbjct 85971 CCCAGCGATGAGAGTTCCGGAGGCTCGAATGCAGTGGACATTGAGGCCGATTCCGCCGGC 86030
Query 154211 GTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTC 154270
| |||| || || |||||| | | || ||| || |||||||||||||| |||||
Sbjct 86031 GGACTTGGAGATCAGAGCGCACTGCCAGAGGGTCTTGAAGATGCCGTCGATGGAGTCGTC 86090
Query 154271 GCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAG 154330
| | | ||||| ||| || || | ||| || || ||| || || || |||||
Sbjct 86091 ACTCATGGTGAGCAGGAAGCAGGAGCTCATCTGGGGCTTGCAGGTGCCGGCGTTGAAGAG 86150
Query 154331 GGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTC 154390
|| || || || || ||| | | ||| | | ||| |||||||||||| |
Sbjct 86151 CGTCGGCGAGGCATGGGTGAACCACCGCTCGGACATGAGGTTGTAGGTTTCGATGGCGGC 86210
Query 154391 TTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTC 154450
| ||| || || ||| || |||| || |||||||| ||||| || || || |||||
Sbjct 86211 GTTGATGTCTTCCTTGTGGATTCCGACGGCCACGCGCATCAGCATATGTTGGGGTCGTTC 86270
Query 154451 GGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAACCGAAATA 154510
|||| | ||| ||||| | ||| || || ||||| ||| | ||||| ||
Sbjct 86271 CACGACCTTCCCGTCGATCTTGAGGAGGTAGGAGCGCTCCAGGGTCTTGAAGCCGAAGTA 86330
Query 154511 CTTGTATTCAAAATCTAGCTCATGAGCGATGGCCGCATCGAGCGTC 154556
|||| | || || | || | ||||||||| | |||| ||
Sbjct 86331 GGTGTAGTTGAAGTCGCGGTCGTAGACGATGGCCGAGTTGAGCTTC 86376
>seq5063
Length=4177
Score = 89.7 bits (98), Expect = 5e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| | ||| || ||||||||||| || ||||
Sbjct 2244 GACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCG 2303
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| | |||||||| || || || || ||||||||||| ||| || || |
Sbjct 2304 AAGATCAAGCGCTGTTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACG 2363
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | ||||||| | || || |||| || | ||| || || || ||||| ||
Sbjct 2364 TTCTCGATCGTGTCGGAGGCTTCGACTTCGAGGGTGATCGTCTTGCCGGTGAGAGTCTTC 2423
Query 138601 ACAAAAATCTGCAT 138614
||||| || |||||
Sbjct 2424 ACAAAGATTTGCAT 2437
Score = 82.4 bits (90), Expect = 8e-11
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| ||||| || ||||||||||| || || || ||||||||||| || ||||
Sbjct 2620 GATTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCG 2679
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| | ||||||||| || || || || ||||| ||||| ||| || || |
Sbjct 2680 AAGATCAAACGCTGTTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACG 2739
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||||| | || || |||| || | ||| || || ||||| || ||
Sbjct 2740 TTCTCGATGGTGTCGGAGGCTTCGACTTCGAGGGTGATCGTCTTGCCGGTCAGGGTCTTC 2799
Query 138601 ACAAAAATCTGCATGGCT 138618
|| || || |||||| ||
Sbjct 2800 ACGAAGATTTGCATGCCT 2817
>seq4834
Length=88581
Score = 89.7 bits (98), Expect = 5e-13
Identities = 139/196 (71%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| |||||||||||||| | |||||| |||||| || ||||| |||| |
Sbjct 21146 GACTCCTTCTGAATGTTGTAGTCTGAAAGAGTACGGCCGTCCTCAAGCTGTTTTCCGGCA 21205
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539
|||| || ||||||||||| ||||| || ||||| || || ||| | || | || |
Sbjct 21206 AAGATGAGGCGCTGTTGGTCGGGAGGGATGCCTTCCTTATC-TTGAATCTTCGCCTTCAC 21264
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
| || | ||||| | | || || |||| || | || || || || || || ||
Sbjct 21265 GTTCTCGATTGTGTCCGAAGCTTCGACTTCGAGGGTGATGGTCTTTCCGGTGAGCGTCTT 21324
Query 138600 TACAAAAATCTGCATG 138615
||||| || ||||||
Sbjct 21325 GACAAAGATTTGCATG 21340
>seq2066
Length=2850
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | ||| || || | | | |||||||| || ||||||||||| |
Sbjct 1928 CCACCACGGAGACGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAC 1987
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||||||||||| || |||| |||| | ||||||||| || || ||
Sbjct 1988 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGA 2047
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| ||||| ||||| ||| || || | | || | |||||| | | || ||
Sbjct 2048 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAGGCTTCGACT 2107
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618
|||| || | ||| || || |||| || || || || ||||||||| ||
Sbjct 2108 TCGAGGGTGATCGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATGCCT 2158
>seq2592
Length=18905
Score = 82.4 bits (90), Expect = 8e-11
Identities = 117/165 (71%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 52398 CGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATC 52457
||| || | ||||||||| || || ||| | || || ||||| ||| |||||||||
Sbjct 15199 CGCGTGATCGCCTTCGCCGCCGTGGAAGGCATCTTCTTCTCCGGATCCTTCGCCGCCATC 15140
Query 52458 TTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCG 52517
|| | | || | | ||| | ||||||||||| || ||||||||| | || ||
Sbjct 15139 TTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGCCTCACCCACAGCAACGAACTCATCTCC 15080
Query 52518 CGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAG 52562
|| |||||||| || ||| ||||| || |||||| ||||||
Sbjct 15079 CGGGACGAAGGCCTCCACCGCGACTTCGCCTGCCTCATGTACAAG 15035
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496215813367200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |