Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq7237 129 6e-25 seq5063 89.7 5e-13 seq4834 89.7 5e-13 seq2066 87.8 2e-12 seq2592 82.4 8e-11 >seq7237 Length=102105 Score = 129 bits (142), Expect = 6e-25 Identities = 482/766 (63%), Gaps = 55/766 (7%) Strand=Plus/Plus Query 153843 TCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGAC 153902 || ||||| | |||||| |||| ||| || || |||| ||||||||||| || ||| Sbjct 85614 TCGAACTCCTTTCCGTAGGCGTCGTGGAGTCCAGGGCACTTGTGCGGACACATGAGGGAC 85673 Query 153903 CACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATG 153962 ||| | |||| | ||||| || |||||||| || || | ||||||| |||| | | Sbjct 85674 CACTCCTTGTCGTCCTTGACACGCTCCATGAACAAGTCGGGGATCCAGAGCCCGTAGAAG 85733 Query 153963 AGGTCGCG--CGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCA-CGCTA 154019 || ||||| ||| | | ||||||| || |||| | |||||| || | | | | Sbjct 85734 AGATCGCGAGCGCGCTCC--TCCTCCGATCCGGTGTTCCTCTTCAGACGCAGGAACTCGA 85791 Query 154020 TAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCT-------- 154071 ||||||| |||||||| || || ||||||| ||| | ||| || ||||| Sbjct 85792 -AGATGTCCGCGTGCCATGGCTCGATGTAGATGGCGAAGGCTCCAGGACGCTGGAAACAT 85850 Query 154072 -----------------------------------------TTCCGCCCTGATCGACGTG 154090 |||| || || ||||||| Sbjct 85851 TCAAGAATAAGAACTCGTCAAGGCACCAAATCCTACCTTGTTTCCTCCTTGGTCGACGTA 85910 Query 154091 GCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGT 154150 ||| | | |||||| |||| |||| ||| || || ||| | | |||||||||||| Sbjct 85911 GCGAGCGGTGTTGTTGTAGACCCGCAGCATAGGAATGAGTCCGTTGGAGGTGCCGTTGGT 85970 Query 154151 CGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCC 154210 | | ||| | ||| ||| || | || || || | ||| || |||||| | Sbjct 85971 CCCAGCGATGAGAGTTCCGGAGGCTCGAATGCAGTGGACATTGAGGCCGATTCCGCCGGC 86030 Query 154211 GTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTC 154270 | |||| || || |||||| | | || ||| || |||||||||||||| ||||| Sbjct 86031 GGACTTGGAGATCAGAGCGCACTGCCAGAGGGTCTTGAAGATGCCGTCGATGGAGTCGTC 86090 Query 154271 GCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAG 154330 | | | ||||| ||| || || | ||| || || ||| || || || ||||| Sbjct 86091 ACTCATGGTGAGCAGGAAGCAGGAGCTCATCTGGGGCTTGCAGGTGCCGGCGTTGAAGAG 86150 Query 154331 GGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTC 154390 || || || || || ||| | | ||| | | ||| |||||||||||| | Sbjct 86151 CGTCGGCGAGGCATGGGTGAACCACCGCTCGGACATGAGGTTGTAGGTTTCGATGGCGGC 86210 Query 154391 TTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTC 154450 | ||| || || ||| || |||| || |||||||| ||||| || || || ||||| Sbjct 86211 GTTGATGTCTTCCTTGTGGATTCCGACGGCCACGCGCATCAGCATATGTTGGGGTCGTTC 86270 Query 154451 GGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAACCGAAATA 154510 |||| | ||| ||||| | ||| || || ||||| ||| | ||||| || Sbjct 86271 CACGACCTTCCCGTCGATCTTGAGGAGGTAGGAGCGCTCCAGGGTCTTGAAGCCGAAGTA 86330 Query 154511 CTTGTATTCAAAATCTAGCTCATGAGCGATGGCCGCATCGAGCGTC 154556 |||| | || || | || | ||||||||| | |||| || Sbjct 86331 GGTGTAGTTGAAGTCGCGGTCGTAGACGATGGCCGAGTTGAGCTTC 86376 >seq5063 Length=4177 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||| || ||||||||||| || |||| Sbjct 2244 GACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCG 2303 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | |||||||| || || || || ||||||||||| ||| || || | Sbjct 2304 AAGATCAAGCGCTGTTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACG 2363 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | || || |||| || | ||| || || || ||||| || Sbjct 2364 TTCTCGATCGTGTCGGAGGCTTCGACTTCGAGGGTGATCGTCTTGCCGGTGAGAGTCTTC 2423 Query 138601 ACAAAAATCTGCAT 138614 ||||| || ||||| Sbjct 2424 ACAAAGATTTGCAT 2437 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || ||||||||||| || || || ||||||||||| || |||| Sbjct 2620 GATTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCG 2679 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | ||||||||| || || || || ||||| ||||| ||| || || | Sbjct 2680 AAGATCAAACGCTGTTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACG 2739 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| | || || |||| || | ||| || || ||||| || || Sbjct 2740 TTCTCGATGGTGTCGGAGGCTTCGACTTCGAGGGTGATCGTCTTGCCGGTCAGGGTCTTC 2799 Query 138601 ACAAAAATCTGCATGGCT 138618 || || || |||||| || Sbjct 2800 ACGAAGATTTGCATGCCT 2817 >seq4834 Length=88581 Score = 89.7 bits (98), Expect = 5e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| | |||||| |||||| || ||||| |||| | Sbjct 21146 GACTCCTTCTGAATGTTGTAGTCTGAAAGAGTACGGCCGTCCTCAAGCTGTTTTCCGGCA 21205 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| || ||||||||||| ||||| || ||||| || || ||| | || | || | Sbjct 21206 AAGATGAGGCGCTGTTGGTCGGGAGGGATGCCTTCCTTATC-TTGAATCTTCGCCTTCAC 21264 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||||| | | || || |||| || | || || || || || || || Sbjct 21265 GTTCTCGATTGTGTCCGAAGCTTCGACTTCGAGGGTGATGGTCTTTCCGGTGAGCGTCTT 21324 Query 138600 TACAAAAATCTGCATG 138615 ||||| || |||||| Sbjct 21325 GACAAAGATTTGCATG 21340 >seq2066 Length=2850 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | | |||||||| || ||||||||||| | Sbjct 1928 CCACCACGGAGACGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAC 1987 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||||| || |||| |||| | ||||||||| || || || Sbjct 1988 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGA 2047 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || | | || | |||||| | | || || Sbjct 2048 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAGGCTTCGACT 2107 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 |||| || | ||| || || |||| || || || || ||||||||| || Sbjct 2108 TCGAGGGTGATCGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATGCCT 2158 >seq2592 Length=18905 Score = 82.4 bits (90), Expect = 8e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 52398 CGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATC 52457 ||| || | ||||||||| || || ||| | || || ||||| ||| ||||||||| Sbjct 15199 CGCGTGATCGCCTTCGCCGCCGTGGAAGGCATCTTCTTCTCCGGATCCTTCGCCGCCATC 15140 Query 52458 TTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCG 52517 || | | || | | ||| | ||||||||||| || ||||||||| | || || Sbjct 15139 TTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGCCTCACCCACAGCAACGAACTCATCTCC 15080 Query 52518 CGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAG 52562 || |||||||| || ||| ||||| || |||||| |||||| Sbjct 15079 CGGGACGAAGGCCTCCACCGCGACTTCGCCTGCCTCATGTACAAG 15035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496215813367200