Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq7237 145 7e-30 seq5063 114 1e-20 seq2066 104 2e-17 seq4834 102 8e-17 seq2592 82.4 7e-11 >seq7237 Length=102105 Score = 145 bits (160), Expect = 7e-30 Identities = 621/967 (64%), Gaps = 42/967 (4%) Strand=Plus/Plus Query 145852 TTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGCCATGTCTATCATGCAC 145911 || || || ||| |||||| ||||| | | ||||| |||||||| || || ||| | Sbjct 84524 TTGAGGGACTGGGACTGATCGATGAAGGCTCCTCGGTCCGCGGCCATCTCGATGATGTCC 84583 Query 145912 TTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCA 145971 || || ||||| |||| || |||| |||| | | || ||| || || Sbjct 84584 TTCTGCGAGATCTCCCAAACGGTCTTGTAGAGGTCCTGCAGCTCCTTGGGGATCGAATCG 84643 Query 145972 ATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAATTCTGGAGTGTAA-AT 146030 |||||||| | || ||| | | | | ||| ||||| || | || || | | Sbjct 84644 ATGTTCTGGATCGATCCACTCTGTGAAATTATCTTGTTCTTCAGAT-TGTCGTCCCATAG 84702 Query 146031 GTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAG 146090 ||| || |||||| |||| | |||| | || || | ||| || ||||| | ||| Sbjct 84703 GTTTCGCTCCACGAGGTCCTTCAGTAGATGAGGATTCACGATCTGGAAGTCGCCAGAGAG 84762 Query 146091 AACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTAT 146150 ||||| | || | ||| ||| ||||||| | |||||||||||| || || || Sbjct 84763 CACGCGGCGACTGTAGATGTTCGACGTGTACGGCTCCATCGACTCGTTGTTTCCTAGGAT 84822 Query 146151 CTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCT 146210 |||||| |||| || || |||||| ||||||||| | | ||| | |||||||| || Sbjct 84823 CTGCGCTGTCGATGCCGTTGGCATGGGCGCCACCAGGAGACTGTTCCGTACGCCGTG-CT 84881 Query 146211 TTGA-ATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGA------ 146263 | | ||||| ||| ||| || ||| | |||| || || ||||| || Sbjct 84882 TCGCGATCTTCTCCTTGAGTGCGGCCCAGTCCCAC---TGGTCGGTGGGCACGACCGGCT 84938 Query 146264 ------------TATTGTAGTTGTCGTAATGCATAGTGCCGCGGAACAGGGGGCTATTCT 146311 | || | | ||||| |||| | || || || || | || || Sbjct 84939 TTCCATCCTCGGTCTTCCACATCTCGTACTGCAGGATTCCTTGGCTCACTGG-CGATCCT 84997 Query 146312 -CGTACGATTCATAAGGACCGTCGATCTTGGCCAGTTCGCAGCTAGCTTCCAGAGCCGAA 146370 | || | || || | ||||| || ||||| ||||| |||||||| |||| Sbjct 84998 TCATAGGTCTCGTAGGTACCGTGCTGCTCCGCCAGCTCGCAAGAGGCTTCCAGGGCCGCG 85057 Query 146371 AAGTATATGGTCTCCGCGATCATGTAGTTGACGCTCCTGGCCTCCTCGCTGTCGTAGGGG 146430 ||| |||||||| |||| | ||| | | | | ||| || ||| | ||||| Sbjct 85058 TGGTAGATGGTCTCGAAGATCCTTCGGTTCATGTTGCGGGCTTCGGGACTGGTGAAGGGG 85117 Query 146431 ATATCG-AGAAGCACAAAGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTG 146489 || || | |||| |||||||| || | ||||| | |||| |||| || || || Sbjct 85118 -TAGCGCATGAGCATGAAGGCGTCCGCCAAGCCCTGGACTCCGATTCCAATCGGCCGATG 85176 Query 146490 TTTCTTGTTACTGTTCGCAGCGCCCG-CAGTGGGATAGTGGTTGCTGTCGATGATCTTGT 146548 ||||||| | || | || | | || ||| |||| ||| |||||||||||||| Sbjct 85177 CCTCTTGTTGGAGGTCTCGGCCTCGGGCACAGGG-TAGTAGTTCGCGTCGATGATCTTGT 85235 Query 146549 TGAGATTACGCACGACAATTTTCGTCAAACGATTCAGCAGGACATAGTCAAATGTTTTAG 146608 | || || | | || | ||||| | | ||| | |||||||| || || Sbjct 85236 TCAGGTTCCTCGTGATGACCTTCGTGATCTCGTGGAGCTTCGCGTAGTCAAAAGTCTTCT 85295 Query 146609 TTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGT 146668 | || ||||| | ||| | ||||| ||||||| ||| || ||||| || | Sbjct 85296 CCT---CGGTGACGAAGCGGTTCAGGGCGACGGAGGCCAGGTTGCACACGGCTACTTCTT 85352 Query 146669 CCTTGTCGCAA--TACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAA 146726 | | || | ||||| || ||||||| |||||||||| ||||||||| | || | Sbjct 85353 CA--GGCGAAGAGTACTGGACGATCTCGGTGCAGAGGTTGGAGCACTTGATCGTCCCGAG 85410 Query 146727 AtttttttGGTT--ACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCG 146784 || || ||||| ||| || |||||||| |||||||||||||||||| || ||| Sbjct 85411 GTTCTTCTGGTTGGACTT--CTGGTTGCAGGCGTCCTTGTAGAGCATGTAAGGAGTGCCG 85468 Query 146785 GTTTCGA 146791 ||||||| Sbjct 85469 GTTTCGA 85475 >seq5063 Length=4177 Score = 114 bits (126), Expect = 1e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 126892 GCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGT 126951 ||| | ||| | ||||| || | || || || || || || ||||| || || || Sbjct 2592 GCGGAGTCGGAGCACCAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGACAGGGT 2651 Query 126952 GCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCC 127011 ||| ||| || || || ||||| ||| ||||||| ||||| ||||| || || || || Sbjct 2652 GCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGAATTCC 2711 Query 127012 CTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGAC 127071 ||||||||| ||| || ||||| | |||| |||||| | |||||||||| Sbjct 2712 TTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGACTTCGAG 2771 Query 127072 GGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 ||| | ||| ||||||||||| || || || || || |||||| || Sbjct 2772 GGTGATCGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATGCCT 2817 Score = 82.4 bits (90), Expect = 7e-11 Identities = 128/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | || | |||| || | || ||||| || || || ||||| ||| Sbjct 1667 TCCACCGCGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 1726 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| || || ||||| || ||||| |||||| |||||||||||||| || Sbjct 1727 GAGAGTGCGCCCGTCTTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCGGGTGG 1786 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| || || ||| | | ||| | |||||||| ||||| Sbjct 1787 GATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTTTCAATGGTGTCCGAGGCTTCGAC 1846 Query 127066 TTC 127068 ||| Sbjct 1847 TTC 1849 >seq2066 Length=2850 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| ||||| ||| |||| | || |||||||| || || || ||||||||| Sbjct 1277 TCTTCGAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGATCTGGGGGGATTCCCTCCTTG 1336 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | |||| ||| |||| | ||| ||||||| ||| | | Sbjct 1337 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCCGAAGCCTCCACTTCGAGGGTGATC 1396 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||||||||| || || || || || ||||| Sbjct 1397 GTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 1431 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | ||| | |||| || | || ||||| || || || ||||| || Sbjct 843 TCCACCGCGAAGTCGAAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 902 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || || || || ||||| ||||| ||| |||| | || |||||||| || || Sbjct 903 GAGGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGATCTGGGGG 962 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||||||||| ||| || ||||| | || | |||||| | ||||| Sbjct 963 GATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCTTCGAC 1022 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||||| || | ||| ||||||||||| || || || || ||||||||| Sbjct 1023 TTCGAGAGTGATCGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 1071 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 126981 AGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTT 127040 |||||| |||||||||||||| || || |||||||||||| ||| || ||| | | Sbjct 2296 AGATCAGGCGCTGCTGATCGGGCGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACAT 2355 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 |||| |||||| | | |||||| || | ||| | || || ||||| || || || | Sbjct 2356 TGTCGATGGTGTCGGAAGCCTCGACCTCAAGGGTGATGGTCTTCCCGGTGAGGGTCTTCA 2415 Query 127101 CAAAAATCTGCATGGCTT 127118 | || || ||||||| || Sbjct 2416 CGAAGATTTGCATGGTTT 2433 >seq4834 Length=88581 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | ||||| || | |||||||| || ||||| ||||| || Sbjct 21112 TCCACCACGAAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCTGA 21171 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || || || || ||||||||||| || |||| | ||||| || |||||||| Sbjct 21172 AAGAGTACGGCCGTCCTCAAGCTGTTTTCCGGCAAAGATGAGGCGCTGTTGGTCGGGAGG 21231 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||| || || ||| ||| | | |||| ||||||| | ||||| Sbjct 21232 GATGCCTTCCTTATCTTGAATCTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCTTCGAC 21291 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||||| ||| | || || ||||| || || || ||||| || |||||| Sbjct 21292 TTCGAGGGTGATGGTCTTTCCGGTGAGCGTCTTGACAAAGATTTGCATG 21340 >seq2592 Length=18905 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 47143 TGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTT 47202 ||||||| |||||| ||| || ||| |||||||||| || ||| || || || || | Sbjct 15195 TGATCGCCTTCGCCGCCGTGGAAGGCATCTTCTTCTCCGGATCCTTCGCCGCCATCTTCT 15136 Query 47203 ACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAG 47262 | || | || | |||||||||||||| |||||||| || ||||| | | Sbjct 15135 GGCTCAAGAAGCGCGGCCTGATGCCCGGCCTCACCCACAGCAACGAACTCATCTCCCGGG 15076 Query 47263 ACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAA 47302 |||||||||| ||| | |||| ||||| ||| ||||| Sbjct 15075 ACGAAGGCCTCCACCGCGACTTCGCCTGCCTCATGTACAA 15036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475456162362400