Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq5063 102 7e-17
seq2066 95.1 1e-14
seq7237 93.3 4e-14
seq4834 82.4 7e-11
>seq5063
Length=4177
Score = 102 bits (112), Expect = 7e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| || || || || || ||||| ||||| || || ||| | || ||| ||
Sbjct 2229 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCG 2288
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| ||| ||||| ||| | ||||| || || || || || ||||| |||||||| || ||
Sbjct 2289 AGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGATCTGGGGGAATTCCTTCTTTGTCCTGG 2348
Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
|| || |||| || | || | |||||||| | ||||||||||| || | ||| ||
Sbjct 2349 ATCTTGGCCTTGA-CGTTCTCGATCGTGTCGGAGGCTTCGACTTCGAGGGTGATCGTCTT 2407
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||||| ||||| || ||||| ||||||||
Sbjct 2408 GCCGGTGAGAGTCTTCACAAAGATTTGCAT 2437
Score = 102 bits (112), Expect = 7e-17
Identities = 158/223 (71%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 45119 GCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGT 45178
|||||| | | ||| || || || || |||||||| ||||| || || || | |||
Sbjct 2592 GCGGAGTCGGAGCACCAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGACAGGGT 2651
Query 45179 TTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCC 45238
||| || | ||| ||||| ||| | ||||| || || || || || ||||| ||
Sbjct 2652 GCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGAATTCC 2711
Query 45239 TTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGA 45297
||| || || || || || |||| || | || | ||||||||| | ||||||||||
Sbjct 2712 TTCCTTGTCCTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCGGAGGCTTCGACTTCGA 2770
Query 45298 GAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
| || | ||| |||||||| || || || || || ||||||||
Sbjct 2771 GGGTGATCGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 2813
>seq2066
Length=2850
Score = 95.1 bits (104), Expect = 1e-14
Identities = 161/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||| ||||| || | | || || || || || || ||||| ||||| || || ||
Sbjct 841 ATTCCACCGCGAAGTCGAAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCC 900
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| |||| || || | || ||||| ||| | || | |||||||| || ||
Sbjct 901 GAGAGGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGATCTGGG 960
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|| || || || || ||||| || || |||| || | || | ||||||||| | ||
Sbjct 961 GGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGA-CGTTCTCAATGGTGTCGGAGGCTTC 1019
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||||||||||| | ||| |||||||| || || || || || || |||||
Sbjct 1020 GACTTCGAGAGTGATCGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1070
Score = 87.8 bits (96), Expect = 2e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244
||| || | ||| ||||| ||| | || | || || || || || ||||||||||| ||
Sbjct 55 ATCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGTTGATCTGGGGGAATGCCTTCCTT 114
Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304
|||||||| || |||| || | |||||| |||| |||||||||||||| |
Sbjct 115 GTCTTGAATCTTCGCCTTGACATTCTCAATGGTGTCAGAAGCTTCGACTTCGAGAGTTAT 174
Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||| ||||| || | || || || || ||||||||
Sbjct 175 CGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 210
>seq7237
Length=102105
Score = 93.3 bits (102), Expect = 4e-14
Identities = 269/406 (66%), Gaps = 10/406 (2%)
Strand=Plus/Minus
Query 122886 AAAATCGAGGAAAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGC 122945
|| ||||| | ||||||| ||||| ||||||||||| |||||||| || | ||
Sbjct 86291 AAGATCGACGGGAAGGTCGTGGAACGACCCCAACATATGCTGATGCGCGTGGCCGTCGGA 86232
Query 122946 GTGCAC--GGACGCGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAAT 123003
| ||| ||| |||||| | ||| | |||||| ||| | | ||||| | |
Sbjct 86231 ATCCACAAGGA--AGACATCAACGCCGCCATCGAAACCTACAACCTCATGTCCGAGCGGT 86174
Query 123004 TTTTCACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTT 123063
||||| || || || || | ||| ||||||||| ||| ||| || |
Sbjct 86173 GGTTCACCCATGCCTCGCCGACGCTCTTCAACGCCGGCACCTGCAAGCCCCAGATGAGCT 86114
Query 123064 CGTGTTTTTTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCT--ATGAAACTTTGCG 123121
| || || |||||||| || | || ||| |||| ||| |||| | || || || |
Sbjct 86113 CCTGCTTCCTGCTCACCATGAGTGACGACTCCATCGACGGCATCTTCAAGACCCTCTG-G 86055
Query 123122 CGATTGCGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAG 123181
| | ||||| |||| ||||| | | |||||| || ||| | || || ||| | | |
Sbjct 86054 C-AGTGCGCTCTGATCTCCAAGTCCGCCGGCGGAATCGGCCTCAATGTCCACTGCATTCG 85996
Query 123182 AGGCCGCGGAAGCCGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCC-ATGC 123240
|| | ||||| | |||| | ||| |||| | | || ||| ||| | ||| ||||
Sbjct 85995 AGCCTCCGGAACTCTCATCGCTGGGACCAACGGCACCTCCAACGGACTC-ATTCCTATGC 85937
Query 123241 TGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGCAA 123286
|||| || ||||| ||| ||| || |||||||||| || || ||
Sbjct 85936 TGCGGGTCTACAACAACACCGCTCGCTACGTCGACCAAGGAGGAAA 85891
>seq4834
Length=88581
Score = 82.4 bits (90), Expect = 7e-11
Identities = 108/147 (73%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254
|||||||| || | || | || || ||||| || || |||||||| |||||||||||
Sbjct 21194 TGTTTTCCGGCAAAGATGAGGCGCTGTTGGTCGGGAGGGATGCCTTCCTTATCTTGAATC 21253
Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313
|| || | || | || | ||||| |||| ||||||||||| || | || || ||
Sbjct 21254 TTCGCCTTCA-CGTTCTCGATTGTGTCCGAAGCTTCGACTTCGAGGGTGATGGTCTTTCC 21312
Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340
||| || || || ||||| ||||||||
Sbjct 21313 GGTGAGCGTCTTGACAAAGATTTGCAT 21339
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451960768199600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |