Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq5063 102 7e-17 seq2066 95.1 1e-14 seq7237 93.3 4e-14 seq4834 82.4 7e-11 >seq5063 Length=4177 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || || ||||| ||||| || || ||| | || ||| || Sbjct 2229 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCG 2288 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||| ||||| ||| | ||||| || || || || || ||||| |||||||| || || Sbjct 2289 AGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGATCTGGGGGAATTCCTTCTTTGTCCTGG 2348 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || |||| || | || | |||||||| | ||||||||||| || | ||| || Sbjct 2349 ATCTTGGCCTTGA-CGTTCTCGATCGTGTCGGAGGCTTCGACTTCGAGGGTGATCGTCTT 2407 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| ||||| || ||||| |||||||| Sbjct 2408 GCCGGTGAGAGTCTTCACAAAGATTTGCAT 2437 Score = 102 bits (112), Expect = 7e-17 Identities = 158/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 45119 GCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGT 45178 |||||| | | ||| || || || || |||||||| ||||| || || || | ||| Sbjct 2592 GCGGAGTCGGAGCACCAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGACAGGGT 2651 Query 45179 TTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCC 45238 ||| || | ||| ||||| ||| | ||||| || || || || || ||||| || Sbjct 2652 GCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGAATTCC 2711 Query 45239 TTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGA 45297 ||| || || || || || |||| || | || | ||||||||| | |||||||||| Sbjct 2712 TTCCTTGTCCTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCGGAGGCTTCGACTTCGA 2770 Query 45298 GAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || | ||| |||||||| || || || || || |||||||| Sbjct 2771 GGGTGATCGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 2813 >seq2066 Length=2850 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| ||||| || | | || || || || || || ||||| ||||| || || || Sbjct 841 ATTCCACCGCGAAGTCGAAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCC 900 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || |||| || || | || ||||| ||| | || | |||||||| || || Sbjct 901 GAGAGGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGATCTGGG 960 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || || ||||| || || |||| || | || | ||||||||| | || Sbjct 961 GGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGA-CGTTCTCAATGGTGTCGGAGGCTTC 1019 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||||||| | ||| |||||||| || || || || || || ||||| Sbjct 1020 GACTTCGAGAGTGATCGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1070 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| || | ||| ||||| ||| | || | || || || || || ||||||||||| || Sbjct 55 ATCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGTTGATCTGGGGGAATGCCTTCCTT 114 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||||| || |||| || | |||||| |||| |||||||||||||| | Sbjct 115 GTCTTGAATCTTCGCCTTGACATTCTCAATGGTGTCAGAAGCTTCGACTTCGAGAGTTAT 174 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || | || || || || |||||||| Sbjct 175 CGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 210 >seq7237 Length=102105 Score = 93.3 bits (102), Expect = 4e-14 Identities = 269/406 (66%), Gaps = 10/406 (2%) Strand=Plus/Minus Query 122886 AAAATCGAGGAAAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGC 122945 || ||||| | ||||||| ||||| ||||||||||| |||||||| || | || Sbjct 86291 AAGATCGACGGGAAGGTCGTGGAACGACCCCAACATATGCTGATGCGCGTGGCCGTCGGA 86232 Query 122946 GTGCAC--GGACGCGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAAT 123003 | ||| ||| |||||| | ||| | |||||| ||| | | ||||| | | Sbjct 86231 ATCCACAAGGA--AGACATCAACGCCGCCATCGAAACCTACAACCTCATGTCCGAGCGGT 86174 Query 123004 TTTTCACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTT 123063 ||||| || || || || | ||| ||||||||| ||| ||| || | Sbjct 86173 GGTTCACCCATGCCTCGCCGACGCTCTTCAACGCCGGCACCTGCAAGCCCCAGATGAGCT 86114 Query 123064 CGTGTTTTTTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCT--ATGAAACTTTGCG 123121 | || || |||||||| || | || ||| |||| ||| |||| | || || || | Sbjct 86113 CCTGCTTCCTGCTCACCATGAGTGACGACTCCATCGACGGCATCTTCAAGACCCTCTG-G 86055 Query 123122 CGATTGCGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAG 123181 | | ||||| |||| ||||| | | |||||| || ||| | || || ||| | | | Sbjct 86054 C-AGTGCGCTCTGATCTCCAAGTCCGCCGGCGGAATCGGCCTCAATGTCCACTGCATTCG 85996 Query 123182 AGGCCGCGGAAGCCGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCC-ATGC 123240 || | ||||| | |||| | ||| |||| | | || ||| ||| | ||| |||| Sbjct 85995 AGCCTCCGGAACTCTCATCGCTGGGACCAACGGCACCTCCAACGGACTC-ATTCCTATGC 85937 Query 123241 TGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGCAA 123286 |||| || ||||| ||| ||| || |||||||||| || || || Sbjct 85936 TGCGGGTCTACAACAACACCGCTCGCTACGTCGACCAAGGAGGAAA 85891 >seq4834 Length=88581 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 |||||||| || | || | || || ||||| || || |||||||| ||||||||||| Sbjct 21194 TGTTTTCCGGCAAAGATGAGGCGCTGTTGGTCGGGAGGGATGCCTTCCTTATCTTGAATC 21253 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || || | || | || | ||||| |||| ||||||||||| || | || || || Sbjct 21254 TTCGCCTTCA-CGTTCTCGATTGTGTCCGAAGCTTCGACTTCGAGGGTGATGGTCTTTCC 21312 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || || ||||| |||||||| Sbjct 21313 GGTGAGCGTCTTGACAAAGATTTGCAT 21339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451960768199600